Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446989
Identifier: 46446989
GI number: 46446989
Start: 1618094
End: 1620697
Strand: Reverse
Name: 46446989
Synonym: pc1355
Alternate gene names: NA
Gene position: 1620697-1618094 (Counterclockwise)
Preceding gene: 46446990
Following gene: 46446986
Centisome position: 67.12
GC content: 36.98
Gene sequence:
>2604_bases TTGGATTGGCATGCAAATTGCACCTTAGGAGGAAAAAAAGGGGGTTTAGCTATGGTCAACCCAACCGGATCTTTTCCAAG TCATCCATCTCAAGAACAAAATATCCAACAACCTGCGTCGCAAGCTGCAGAAGGAAAAAAAAGAAAACAAAAAGGAAAGG AAAAAATAGAAGATACTCATCAAAAAACTGAGGAAGCGGCTCAGACCGCCATTCAAAGTTTATCTACTCCCGAATCATCT CCCCCTCATAAATTTCCTAGGCGAACAAAAGAAGAAGAAGAGGCCTTAGAAGCCGAGGATACTAGTTCTTTGAATAGCAG CAGGAGTTTGCCGACAAGAAAAAGCACTCAAAAAGAGAGTAAAGTTTATCAAGAAACTTTTCCGGCCGCAATGCCTTCTA GGGGAACAAAATCCAAAGCAGGGGATAAAATAAACCCACCTAAACTTGAAAAGCGTTCTTCCTTTGGTTTAGAGAGCAAT AGAGAAATTTATATCAATGCAAAAGAATTTATTGCAAAAGCTGTAGAACCCTTTTTCCAAATTAATAACCCCCTTTCTTT GAAGCTTGGTCAATTCATTGCTAAAATGGATGCCTATAATAATCGGGGAGATAAAAATGAAAATCCCCCTGCAGAATTAA TTGACATGCATGCGCAAGCGCGGCTACTTCTTTTTCTTCACATGGGCATAGCTTACTCTGGGTTGGAATGTCAAATTGAT TGGCTACCAGCCAAAAAACAATTTTACATCGGCTCAGAACAAACAGGCACAGAAGCTTGTCATCACTCTTTATTTGCCGA AGTGAATGATACCTATCTTTATACGCTTAAAGAGTCTTTACTGGAAGCAGTACGCGCATTGCGTGAAAACCAAAGAGAAA TTCCTCTTCCGTTAAAAGAAAGGCTCCTTAAGATAAATGTCTCTAAAGAAAGACTTCAAAAGACAATTAAAGCTATTTTA GACAATAAGATTCGCGCATCTGAGGGAATTGAAAACTTGTGGAAAGAGACATTTCCTTCTTCTCCAGAACATCCAGAGTT AAAAAAGTCTTTAGTGGAAGCAGTACGCGCATTGCGTGATAACCAAAAAGAAATTCCTCTTCCGTTAAAAGAAAGGCTCC TTGAGCTAAATGTCTCTGAAGAAGGACTTCAAAAGACCATTAAAGCTATTTTAGACAATAAGATTTACGCATCTGAGGGA ATTGAAAACTTATGGAAAGAGACATTTCCTCTTTCTATAGAGAATCAAGCCCTAGCAAAAGATTCTTTATTCCAATATAT AGAGGAGCGACAAAGGCAGCCGCAAGAAATAATAGGCAAGCTGCAAACAAAGGGGATTCCTAGAAATGTTATTAATGCAT TACTAAAAAATAAACGATTAAAGAGAGTGGATGTAAATGTGGATGAAGTGTTTAAAAAATGGGTGAATCCTTCTTTATGG GCAAACACGAACTTTTATTTTTTAAACCATCATACTTTAATAGCTCCTTCTGCCTTAAATAAAGTGGACGATTTAATTGA AAAAAAAGTGCGCTCCGGTGCTATGAAAATCCTTAATGCTATTGCCAAAAAAGAGATTAGCCCTTTGGAAGGTACTCAAG AAGTAGGCAAACTCATTATTGCAAGCCTGGGTAAAAGCCTAAAGTTTACACGAAAAAAAATTGCTTTAGTCACCGATTTA GAAAAAGAATTGGAGAAGCTGGGCAAACTTTTTAACGGGTTAGAGATTGAAAAAACTAGCGCTAGTCACACCCCCTTGTA CAAAAAGTTAGAAAATTTAAAAGAGGTGCAAAGCACCGTTAATGAACTCATGCGCATTCTCGATGCATTAGCAAATCTTA ATCACTCTCCTTCCCATATAGCGATTGTGGATTTTAAAATAGAACAAGCAAGAATTAAAACAATGCAAGACACGTTCAAT GAATTTAGAACAGAGTTAACAGGACGGATGGATAAAACATTTGAAAGTCGCTATCAACAGTATCGGCAAGCCCCTTTTTT TCAACATCAAAAACAAATCGAGGAACTAAAAATCACCATAGAGGAGAAAGAGAGGGAAAAAGAAGAGTTTGAGCAAGAAT TGAAAGAAAAGGATTTGACTCCAGAAGAAAAGAGGTTGTTGTTCTCACTAGAAGAGAATCTACCAGAAAATTCAACTTTC CTAAATCTTGAACCTAAAGAAAAGCTAGATTTAGCTGAAAAGTTATCATATGGCGAAGCTAAACGTTATGAAGCTTATAA AAGTGTTATAGATAAATTTCTGGAAAAAACTGCCTTAAAAAAGGGCCTAGAGGAAATAAAGAGAATAATTCAGCAAAATC GACGTTTAATGCAGGAACTAGGAGAAGGGAAAGAGCCTGAAGATGCTTATTTCAGAACACAATATCTAAACATTTCAAAA GTAATAATTGAATGGTCAATAAACTCTCAGTTTAGATTAATTCATTATCCTATGTCTAGCGCTACGCTTTCTTTTGTCGA AGAGTTATTAAACCTACAATCCAGGGCGACTTTTCAGCTTGCCCAGGATTTGGAGCAAGCTGATCCTTTTATTTATGAAG AGGAAGCTTTAAAGCAAGCCTTGATTAGACGGTCAACTGAATAA
Upstream 100 bases:
>100_bases TAGATATTTTCATAGAGAATTCGCTTGGTTTTGATTTTCTATTGCATTCTCAGTTCAAGCTCATTTTTCCGCTATTAAAA ACCAACTTTTCATTTTCACT
Downstream 100 bases:
>100_bases GCTAAATTTCAAAGCTTAAGGATGTGAATGGGGGAGTGAAGCCTTAGCAAAGTCCCAAACATCTAACCCCCCTTCTTTAT CGCAGCAAGCCAAACGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 867; Mature: 867
Protein sequence:
>867_residues MDWHANCTLGGKKGGLAMVNPTGSFPSHPSQEQNIQQPASQAAEGKKRKQKGKEKIEDTHQKTEEAAQTAIQSLSTPESS PPHKFPRRTKEEEEALEAEDTSSLNSSRSLPTRKSTQKESKVYQETFPAAMPSRGTKSKAGDKINPPKLEKRSSFGLESN REIYINAKEFIAKAVEPFFQINNPLSLKLGQFIAKMDAYNNRGDKNENPPAELIDMHAQARLLLFLHMGIAYSGLECQID WLPAKKQFYIGSEQTGTEACHHSLFAEVNDTYLYTLKESLLEAVRALRENQREIPLPLKERLLKINVSKERLQKTIKAIL DNKIRASEGIENLWKETFPSSPEHPELKKSLVEAVRALRDNQKEIPLPLKERLLELNVSEEGLQKTIKAILDNKIYASEG IENLWKETFPLSIENQALAKDSLFQYIEERQRQPQEIIGKLQTKGIPRNVINALLKNKRLKRVDVNVDEVFKKWVNPSLW ANTNFYFLNHHTLIAPSALNKVDDLIEKKVRSGAMKILNAIAKKEISPLEGTQEVGKLIIASLGKSLKFTRKKIALVTDL EKELEKLGKLFNGLEIEKTSASHTPLYKKLENLKEVQSTVNELMRILDALANLNHSPSHIAIVDFKIEQARIKTMQDTFN EFRTELTGRMDKTFESRYQQYRQAPFFQHQKQIEELKITIEEKEREKEEFEQELKEKDLTPEEKRLLFSLEENLPENSTF LNLEPKEKLDLAEKLSYGEAKRYEAYKSVIDKFLEKTALKKGLEEIKRIIQQNRRLMQELGEGKEPEDAYFRTQYLNISK VIIEWSINSQFRLIHYPMSSATLSFVEELLNLQSRATFQLAQDLEQADPFIYEEEALKQALIRRSTE
Sequences:
>Translated_867_residues MDWHANCTLGGKKGGLAMVNPTGSFPSHPSQEQNIQQPASQAAEGKKRKQKGKEKIEDTHQKTEEAAQTAIQSLSTPESS PPHKFPRRTKEEEEALEAEDTSSLNSSRSLPTRKSTQKESKVYQETFPAAMPSRGTKSKAGDKINPPKLEKRSSFGLESN REIYINAKEFIAKAVEPFFQINNPLSLKLGQFIAKMDAYNNRGDKNENPPAELIDMHAQARLLLFLHMGIAYSGLECQID WLPAKKQFYIGSEQTGTEACHHSLFAEVNDTYLYTLKESLLEAVRALRENQREIPLPLKERLLKINVSKERLQKTIKAIL DNKIRASEGIENLWKETFPSSPEHPELKKSLVEAVRALRDNQKEIPLPLKERLLELNVSEEGLQKTIKAILDNKIYASEG IENLWKETFPLSIENQALAKDSLFQYIEERQRQPQEIIGKLQTKGIPRNVINALLKNKRLKRVDVNVDEVFKKWVNPSLW ANTNFYFLNHHTLIAPSALNKVDDLIEKKVRSGAMKILNAIAKKEISPLEGTQEVGKLIIASLGKSLKFTRKKIALVTDL EKELEKLGKLFNGLEIEKTSASHTPLYKKLENLKEVQSTVNELMRILDALANLNHSPSHIAIVDFKIEQARIKTMQDTFN EFRTELTGRMDKTFESRYQQYRQAPFFQHQKQIEELKITIEEKEREKEEFEQELKEKDLTPEEKRLLFSLEENLPENSTF LNLEPKEKLDLAEKLSYGEAKRYEAYKSVIDKFLEKTALKKGLEEIKRIIQQNRRLMQELGEGKEPEDAYFRTQYLNISK VIIEWSINSQFRLIHYPMSSATLSFVEELLNLQSRATFQLAQDLEQADPFIYEEEALKQALIRRSTE >Mature_867_residues MDWHANCTLGGKKGGLAMVNPTGSFPSHPSQEQNIQQPASQAAEGKKRKQKGKEKIEDTHQKTEEAAQTAIQSLSTPESS PPHKFPRRTKEEEEALEAEDTSSLNSSRSLPTRKSTQKESKVYQETFPAAMPSRGTKSKAGDKINPPKLEKRSSFGLESN REIYINAKEFIAKAVEPFFQINNPLSLKLGQFIAKMDAYNNRGDKNENPPAELIDMHAQARLLLFLHMGIAYSGLECQID WLPAKKQFYIGSEQTGTEACHHSLFAEVNDTYLYTLKESLLEAVRALRENQREIPLPLKERLLKINVSKERLQKTIKAIL DNKIRASEGIENLWKETFPSSPEHPELKKSLVEAVRALRDNQKEIPLPLKERLLELNVSEEGLQKTIKAILDNKIYASEG IENLWKETFPLSIENQALAKDSLFQYIEERQRQPQEIIGKLQTKGIPRNVINALLKNKRLKRVDVNVDEVFKKWVNPSLW ANTNFYFLNHHTLIAPSALNKVDDLIEKKVRSGAMKILNAIAKKEISPLEGTQEVGKLIIASLGKSLKFTRKKIALVTDL EKELEKLGKLFNGLEIEKTSASHTPLYKKLENLKEVQSTVNELMRILDALANLNHSPSHIAIVDFKIEQARIKTMQDTFN EFRTELTGRMDKTFESRYQQYRQAPFFQHQKQIEELKITIEEKEREKEEFEQELKEKDLTPEEKRLLFSLEENLPENSTF LNLEPKEKLDLAEKLSYGEAKRYEAYKSVIDKFLEKTALKKGLEEIKRIIQQNRRLMQELGEGKEPEDAYFRTQYLNISK VIIEWSINSQFRLIHYPMSSATLSFVEELLNLQSRATFQLAQDLEQADPFIYEEEALKQALIRRSTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99669; Mature: 99669
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWHANCTLGGKKGGLAMVNPTGSFPSHPSQEQNIQQPASQAAEGKKRKQKGKEKIEDTH CCCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKTEEAAQTAIQSLSTPESSPPHKFPRRTKEEEEALEAEDTSSLNSSRSLPTRKSTQKES HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH KVYQETFPAAMPSRGTKSKAGDKINPPKLEKRSSFGLESNREIYINAKEFIAKAVEPFFQ HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH INNPLSLKLGQFIAKMDAYNNRGDKNENPPAELIDMHAQARLLLFLHMGIAYSGLECQID CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE WLPAKKQFYIGSEQTGTEACHHSLFAEVNDTYLYTLKESLLEAVRALRENQREIPLPLKE EECCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH RLLKINVSKERLQKTIKAILDNKIRASEGIENLWKETFPSSPEHPELKKSLVEAVRALRD HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC NQKEIPLPLKERLLELNVSEEGLQKTIKAILDNKIYASEGIENLWKETFPLSIENQALAK CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH DSLFQYIEERQRQPQEIIGKLQTKGIPRNVINALLKNKRLKRVDVNVDEVFKKWVNPSLW HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCEE ANTNFYFLNHHTLIAPSALNKVDDLIEKKVRSGAMKILNAIAKKEISPLEGTQEVGKLII CCCCEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ASLGKSLKFTRKKIALVTDLEKELEKLGKLFNGLEIEKTSASHTPLYKKLENLKEVQSTV HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH NELMRILDALANLNHSPSHIAIVDFKIEQARIKTMQDTFNEFRTELTGRMDKTFESRYQQ HHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRQAPFFQHQKQIEELKITIEEKEREKEEFEQELKEKDLTPEEKRLLFSLEENLPENSTF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE LNLEPKEKLDLAEKLSYGEAKRYEAYKSVIDKFLEKTALKKGLEEIKRIIQQNRRLMQEL EECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GEGKEPEDAYFRTQYLNISKVIIEWSINSQFRLIHYPMSSATLSFVEELLNLQSRATFQL CCCCCCCHHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH AQDLEQADPFIYEEEALKQALIRRSTE HHHHHHCCCCEEHHHHHHHHHHHCCCC >Mature Secondary Structure MDWHANCTLGGKKGGLAMVNPTGSFPSHPSQEQNIQQPASQAAEGKKRKQKGKEKIEDTH CCCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKTEEAAQTAIQSLSTPESSPPHKFPRRTKEEEEALEAEDTSSLNSSRSLPTRKSTQKES HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH KVYQETFPAAMPSRGTKSKAGDKINPPKLEKRSSFGLESNREIYINAKEFIAKAVEPFFQ HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH INNPLSLKLGQFIAKMDAYNNRGDKNENPPAELIDMHAQARLLLFLHMGIAYSGLECQID CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE WLPAKKQFYIGSEQTGTEACHHSLFAEVNDTYLYTLKESLLEAVRALRENQREIPLPLKE EECCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH RLLKINVSKERLQKTIKAILDNKIRASEGIENLWKETFPSSPEHPELKKSLVEAVRALRD HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC NQKEIPLPLKERLLELNVSEEGLQKTIKAILDNKIYASEGIENLWKETFPLSIENQALAK CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH DSLFQYIEERQRQPQEIIGKLQTKGIPRNVINALLKNKRLKRVDVNVDEVFKKWVNPSLW HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCEE ANTNFYFLNHHTLIAPSALNKVDDLIEKKVRSGAMKILNAIAKKEISPLEGTQEVGKLII CCCCEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ASLGKSLKFTRKKIALVTDLEKELEKLGKLFNGLEIEKTSASHTPLYKKLENLKEVQSTV HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH NELMRILDALANLNHSPSHIAIVDFKIEQARIKTMQDTFNEFRTELTGRMDKTFESRYQQ HHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRQAPFFQHQKQIEELKITIEEKEREKEEFEQELKEKDLTPEEKRLLFSLEENLPENSTF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE LNLEPKEKLDLAEKLSYGEAKRYEAYKSVIDKFLEKTALKKGLEEIKRIIQQNRRLMQEL EECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GEGKEPEDAYFRTQYLNISKVIIEWSINSQFRLIHYPMSSATLSFVEELLNLQSRATFQL CCCCCCCHHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH AQDLEQADPFIYEEEALKQALIRRSTE HHHHHHCCCCEEHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA