Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is nuoC [H]
Identifier: 46446195
GI number: 46446195
Start: 694622
End: 695146
Strand: Direct
Name: nuoC [H]
Synonym: pc0561
Alternate gene names: 46446195
Gene position: 694622-695146 (Clockwise)
Preceding gene: 46446194
Following gene: 46446196
Centisome position: 28.77
GC content: 32.19
Gene sequence:
>525_bases ATGACGTCTCAAATTGTTTTAGATCACATAAAAAAAAACTTTCAAGCATTCATTTTGAATCAAACTCTAGAATTTGGTGA AACGACTTTTGAAGTTAATCGAGGTGGGCTAAAAATAATATTAAATTTTTTAAAAATTCATGAAGATTGCCAGTTTGAAG TATTAATGGACTTAACTGCGGTTGATTATTTATTTCCAGTTAAACGAACACAAATTCTTTATTTTTTACAAAATTTTTCC CGGCTAGATCGAATTCGCATAGGGATTACGATTGAAAGAGGCGAAATGCTTCCGACTGTTACAGATTTGTGGGAAGGAGC GAACTGGTATGAGAGAGAATTATTTGATATGTTTGGAGTTGAATTTAAGGGACATCCAGAATTAAGCCGTATACTGATGC CTGATCATTGGTTAGGACATCCAATGTTACGTGACTATGCATTAACTGAAGAAGTTGTTCAATTTAAAAATAATGTAAAA CCGAAAGTACCTTCACAGATTATTTCTTATGACAAAAGTAAGTAA
Upstream 100 bases:
>100_bases CAGGCTGCCCTCCTCGTCCAGAGGCATTAATAGATGCGTTAATCATGCTGCAAAATAAAATTAAATATGGAGACTCTTCT AAAAAAGGGAAAAGACATCT
Downstream 100 bases:
>100_bases AGAGCGCCTTAAAGAACTTGAGGAGTCCGGTGATGTCATGGAGCTCAATTTGGGCCCGCAACATCCTTCTACTCACGGTG TATTGCGTTTAAAATTGCGC
Product: putative NADH-ubiquinone oxidoreductase chain C/D
Products: NA
Alternate protein names: NADH dehydrogenase I subunit C; NDH-1 subunit C [H]
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MTSQIVLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDLTAVDYLFPVKRTQILYFLQNFS RLDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMFGVEFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVK PKVPSQIISYDKSK
Sequences:
>Translated_174_residues MTSQIVLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDLTAVDYLFPVKRTQILYFLQNFS RLDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMFGVEFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVK PKVPSQIISYDKSK >Mature_173_residues TSQIVLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDLTAVDYLFPVKRTQILYFLQNFSR LDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMFGVEFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVKP KVPSQIISYDKSK
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG0852
COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I 30 kDa subunit family [H]
Homologues:
Organism=Homo sapiens, GI4758788, Length=141, Percent_Identity=36.1702127659575, Blast_Score=90, Evalue=1e-18, Organism=Escherichia coli, GI145693162, Length=83, Percent_Identity=40.9638554216867, Blast_Score=77, Evalue=7e-16, Organism=Caenorhabditis elegans, GI32563621, Length=118, Percent_Identity=33.0508474576271, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71990788, Length=118, Percent_Identity=33.0508474576271, Blast_Score=79, Evalue=8e-16, Organism=Drosophila melanogaster, GI24656494, Length=114, Percent_Identity=37.719298245614, Blast_Score=85, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010218 - InterPro: IPR001268 - InterPro: IPR020396 - ProDom: PD001581 [H]
Pfam domain/function: PF00329 Complex1_30kDa [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 20543; Mature: 20412
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQIVLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDLTA CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH VDYLFPVKRTQILYFLQNFSRLDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMFGV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCC EFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVKPKVPSQIISYDKSK CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC >Mature Secondary Structure TSQIVLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDLTA CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH VDYLFPVKRTQILYFLQNFSRLDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMFGV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCC EFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVKPKVPSQIISYDKSK CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA