Click here to switch to the map view.

The map label for this gene is rtxA [C]

Identifier: 46446172

GI number: 46446172

Start: 671495

End: 672583

Strand: Direct

Name: rtxA [C]

Synonym: pc0538

Alternate gene names: 46446172

Gene position: 671495-672583 (Clockwise)

Preceding gene: 46446171

Following gene: 46446176

Centisome position: 27.81

GC content: 34.89

Gene sequence:

>1089_bases
TTGGCCTATGCCTTATTTTTTGTAGCGGCGCGGACAGTAATCTTTTCTTCTACGCACTCATTTAAAAAAAAATGTAGCGC
CGCTAGAGTTGAAAATTCACGGCTAATTTTGCAATCCTTAGGTGGGAAAGAGTTAAGTTTAAAAATGCCAGATGGGCATC
AAATTTCTGCCATGTATTTGAACAGTAGTGCCTGTTTGGAGGTTTTAATTAATAAAGGAGCTCAAAAAGATAACCTTCAA
TTAACGCAAGAGCAAGTTCAAGAAATTCTTTGGATTCCACAAGATAAGCAAGATCTTCTTCATTTGGTTGATAGATTAGG
TTTAACCCTTAAACAACATAATGGAAGAGATTATGTAGCTTTAGGCATTCCTAAAAATAGTTCTCAGATAGATTCCACAC
ATGTTATAAGCGAATTAAATAAGGCAAATGCTGGGACAGTCATTTATGCTCCTGGAAGCGGCCATATATTTGAATTCAGA
CGAAAAACCATAGGTACTTTCTTAGTTGGATACGGTATGAACATGCTTGTATTCAATTATTCACAAACAGGTCGAAGTGA
AGGAAAAATTTCTGAACAAGCAACTTATGAAAATGTAGAAGCAGCTTATGAATATTTGAAAAAAGTTAAAAAGTTAAGTA
ATCATAAAATTTTAGGTTATGGCCATTGCATGGGAGCAGGCCCAATCTTACATCTTGCTTCTAAACATTCTATTTCTACC
TTGGTTGATCGTGCGCCGATAAATATGGGAACATTTGCACAATTAAGGCTCATTACTTTGTGTAAGCTCCCTCCTTTCCT
CTATTTTTTAACTGATTGGGTCAAACCTGTGATGGAAAATTGTTTTCGTTATGCAAACGATGAAAGAATTGCTCATGTAA
AAGGATGTTTAGCGCTAATAGAAGCAACGCATGATGCCATGATTCCCGCAGAATATATACAGAACCTTTTTGATTTAGCA
AAATCAGCTAAGTCAAAAGTAAAATTAACTTTAGAATCTGATCATGATGCTGATTTATGTGGAAATGATGAGCTGTTAAG
ATTAGATTTAGGAAAATTTTTAACAGAAGCCCAGATTATTGGTTATTAA

Upstream 100 bases:

>100_bases
CTGTTTAGATAAAACATTTTCAGGAAAAACTGGACTGGGATATTTAGGACGAACAATAATTTGGATTAAAGATAAATTAA
AATCTGTAGCAATTGATGCA

Downstream 100 bases:

>100_bases
TAAGTTGAAGCCTTGTAAATAACTAGTAAAAATCATTGAAACAGCAACAGCTCTTGTAGCTTACAAAGCTATAGCATAAA
CTTTCCAAATAAATAAATCC

Product: putative RTX-toxin, partial length

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MAYALFFVAARTVIFSSTHSFKKKCSAARVENSRLILQSLGGKELSLKMPDGHQISAMYLNSSACLEVLINKGAQKDNLQ
LTQEQVQEILWIPQDKQDLLHLVDRLGLTLKQHNGRDYVALGIPKNSSQIDSTHVISELNKANAGTVIYAPGSGHIFEFR
RKTIGTFLVGYGMNMLVFNYSQTGRSEGKISEQATYENVEAAYEYLKKVKKLSNHKILGYGHCMGAGPILHLASKHSIST
LVDRAPINMGTFAQLRLITLCKLPPFLYFLTDWVKPVMENCFRYANDERIAHVKGCLALIEATHDAMIPAEYIQNLFDLA
KSAKSKVKLTLESDHDADLCGNDELLRLDLGKFLTEAQIIGY

Sequences:

>Translated_362_residues
MAYALFFVAARTVIFSSTHSFKKKCSAARVENSRLILQSLGGKELSLKMPDGHQISAMYLNSSACLEVLINKGAQKDNLQ
LTQEQVQEILWIPQDKQDLLHLVDRLGLTLKQHNGRDYVALGIPKNSSQIDSTHVISELNKANAGTVIYAPGSGHIFEFR
RKTIGTFLVGYGMNMLVFNYSQTGRSEGKISEQATYENVEAAYEYLKKVKKLSNHKILGYGHCMGAGPILHLASKHSIST
LVDRAPINMGTFAQLRLITLCKLPPFLYFLTDWVKPVMENCFRYANDERIAHVKGCLALIEATHDAMIPAEYIQNLFDLA
KSAKSKVKLTLESDHDADLCGNDELLRLDLGKFLTEAQIIGY
>Mature_361_residues
AYALFFVAARTVIFSSTHSFKKKCSAARVENSRLILQSLGGKELSLKMPDGHQISAMYLNSSACLEVLINKGAQKDNLQL
TQEQVQEILWIPQDKQDLLHLVDRLGLTLKQHNGRDYVALGIPKNSSQIDSTHVISELNKANAGTVIYAPGSGHIFEFRR
KTIGTFLVGYGMNMLVFNYSQTGRSEGKISEQATYENVEAAYEYLKKVKKLSNHKILGYGHCMGAGPILHLASKHSISTL
VDRAPINMGTFAQLRLITLCKLPPFLYFLTDWVKPVMENCFRYANDERIAHVKGCLALIEATHDAMIPAEYIQNLFDLAK
SAKSKVKLTLESDHDADLCGNDELLRLDLGKFLTEAQIIGY

Specific function: Unknown

COG id: COG1073

COG function: function code R; Hydrolases of the alpha/beta superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40386; Mature: 40255

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYALFFVAARTVIFSSTHSFKKKCSAARVENSRLILQSLGGKELSLKMPDGHQISAMYL
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEHEECCCCCEEEEECCCCCEEEEEEE
NSSACLEVLINKGAQKDNLQLTQEQVQEILWIPQDKQDLLHLVDRLGLTLKQHNGRDYVA
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCEEEE
LGIPKNSSQIDSTHVISELNKANAGTVIYAPGSGHIFEFRRKTIGTFLVGYGMNMLVFNY
EECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
SQTGRSEGKISEQATYENVEAAYEYLKKVKKLSNHKILGYGHCMGAGPILHLASKHSIST
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCHHHH
LVDRAPINMGTFAQLRLITLCKLPPFLYFLTDWVKPVMENCFRYANDERIAHVKGCLALI
HHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EATHDAMIPAEYIQNLFDLAKSAKSKVKLTLESDHDADLCGNDELLRLDLGKFLTEAQII
HHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHC
GY
CC
>Mature Secondary Structure 
AYALFFVAARTVIFSSTHSFKKKCSAARVENSRLILQSLGGKELSLKMPDGHQISAMYL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEHEECCCCCEEEEECCCCCEEEEEEE
NSSACLEVLINKGAQKDNLQLTQEQVQEILWIPQDKQDLLHLVDRLGLTLKQHNGRDYVA
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCEEEE
LGIPKNSSQIDSTHVISELNKANAGTVIYAPGSGHIFEFRRKTIGTFLVGYGMNMLVFNY
EECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
SQTGRSEGKISEQATYENVEAAYEYLKKVKKLSNHKILGYGHCMGAGPILHLASKHSIST
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCHHHH
LVDRAPINMGTFAQLRLITLCKLPPFLYFLTDWVKPVMENCFRYANDERIAHVKGCLALI
HHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EATHDAMIPAEYIQNLFDLAKSAKSKVKLTLESDHDADLCGNDELLRLDLGKFLTEAQII
HHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHC
GY
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA