Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446071
Identifier: 46446071
GI number: 46446071
Start: 564773
End: 565903
Strand: Direct
Name: 46446071
Synonym: pc0437
Alternate gene names: NA
Gene position: 564773-565903 (Clockwise)
Preceding gene: 46446069
Following gene: 46446073
Centisome position: 23.39
GC content: 36.6
Gene sequence:
>1131_bases GTGGATTTTACACGTGAACCCATCATAGAAACGATTGTTACTCCTAAAGAAGGATATAAATTAGTCGTTAGAAGCAGTAA AGGATCAGCGCAAGAAGAGTATTTTGTTGATTCTGTAGAAGTTGTCTCTTTTAGTCAGGCTCTATTTTTCCGTTCCATGG AAAGGCCTAAATCATTTCTTGTTCCCGTAGCTGACTATGAAATTTTAGAAGTCAGAGAAGCTCGCATGGTTTTAAAAAAT GCAGGTTTAGATCGTTCAATTAAAATTGGGGGAGGGCGTGAAGGAAACTTAAAAGCAACTAATCGAGAATTTGACAAAAA TGAGGGAGTAACAGAGGAAGAAATTGTTGCCGAGCAAGAAGATACGAATATTCAAGTCTCCGAAAATCCAGAATCTAGGC AAGAAGTTAAAGTCGATAAAAAACGAGATAGACGCCGCCATTATCGAAAGCGAAGAGGAGGTAAGGGGGAAGAGCGAGAA GAAAATGCAAAAGAAGCCATCAATGATTTATCTCCTTCGGACATTCCATCATTGGAAGACGAGAAAATTAATCTTCTGCC ACCTGAAGAGGTATTAGAAAATGGGCAAACGTCGACGCTATCGCCTAGTTTGCTATCTTCTCTATTACAACCACCTCCTA CATTAATTTCAGAAACAATTAACCGGTATAGAGAAAATGCGTTATTTAAAAATGCTTTTTTCTTAACTGAAGAGGAACAG TATAAGCCTCATGACAAGGTTCAAGAACTCCTAAATGAAGATGATGATGTCGATTTTGCTCCTTATTTGCAAGAACCAAC ATTTGCAAAGGAACCAGAAAGTTCTAATTCTGGGGCTACAGAGCAACTCTTGGGTGATAAAACAGAGCTTTTTGAAAATA TTATTGAACAAGAGTTGAAGCGAGAAGAACAAACTCAAGAAGAAATTTTCAAAGAAATTCCGTCTGAAAACACAACTTCC AATGAAATCGCATTAACAAATGAGTCTAATCTTGCTGAATATTCTGGAGAATTATCTTTTCCCGCTTATAAAAAAGAGTC TGAAAATGAAGGAGAAGTATTTTTCGAAGAAAGTCAAAAGCGAGAGGAAAATGAAAAGATAGTTCATTCTGAAAATAAAA CAGATGTATAA
Upstream 100 bases:
>100_bases TCTATTCTTCAAATATTGTTGTCTTAGTCTTTAGCTAATAAAACTTGTTAAGTTGACTGAATATAAATCAGATGGAAACA CTTAACAATGGATAACTAAA
Downstream 100 bases:
>100_bases TTTTAATTTAAGCAAAGCCTTCTGATTAAGTTCAGGAGGTTAAATTGAATGGACATTTAAGATAAGATAGAAAAACCTTG ACAAAATATCAGTTGAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MDFTREPIIETIVTPKEGYKLVVRSSKGSAQEEYFVDSVEVVSFSQALFFRSMERPKSFLVPVADYEILEVREARMVLKN AGLDRSIKIGGGREGNLKATNREFDKNEGVTEEEIVAEQEDTNIQVSENPESRQEVKVDKKRDRRRHYRKRRGGKGEERE ENAKEAINDLSPSDIPSLEDEKINLLPPEEVLENGQTSTLSPSLLSSLLQPPPTLISETINRYRENALFKNAFFLTEEEQ YKPHDKVQELLNEDDDVDFAPYLQEPTFAKEPESSNSGATEQLLGDKTELFENIIEQELKREEQTQEEIFKEIPSENTTS NEIALTNESNLAEYSGELSFPAYKKESENEGEVFFEESQKREENEKIVHSENKTDV
Sequences:
>Translated_376_residues MDFTREPIIETIVTPKEGYKLVVRSSKGSAQEEYFVDSVEVVSFSQALFFRSMERPKSFLVPVADYEILEVREARMVLKN AGLDRSIKIGGGREGNLKATNREFDKNEGVTEEEIVAEQEDTNIQVSENPESRQEVKVDKKRDRRRHYRKRRGGKGEERE ENAKEAINDLSPSDIPSLEDEKINLLPPEEVLENGQTSTLSPSLLSSLLQPPPTLISETINRYRENALFKNAFFLTEEEQ YKPHDKVQELLNEDDDVDFAPYLQEPTFAKEPESSNSGATEQLLGDKTELFENIIEQELKREEQTQEEIFKEIPSENTTS NEIALTNESNLAEYSGELSFPAYKKESENEGEVFFEESQKREENEKIVHSENKTDV >Mature_376_residues MDFTREPIIETIVTPKEGYKLVVRSSKGSAQEEYFVDSVEVVSFSQALFFRSMERPKSFLVPVADYEILEVREARMVLKN AGLDRSIKIGGGREGNLKATNREFDKNEGVTEEEIVAEQEDTNIQVSENPESRQEVKVDKKRDRRRHYRKRRGGKGEERE ENAKEAINDLSPSDIPSLEDEKINLLPPEEVLENGQTSTLSPSLLSSLLQPPPTLISETINRYRENALFKNAFFLTEEEQ YKPHDKVQELLNEDDDVDFAPYLQEPTFAKEPESSNSGATEQLLGDKTELFENIIEQELKREEQTQEEIFKEIPSENTTS NEIALTNESNLAEYSGELSFPAYKKESENEGEVFFEESQKREENEKIVHSENKTDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chlamydial CPn_0623/CT_504/TC_0791 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43143; Mature: 43143
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFTREPIIETIVTPKEGYKLVVRSSKGSAQEEYFVDSVEVVSFSQALFFRSMERPKSFL CCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHE VPVADYEILEVREARMVLKNAGLDRSIKIGGGREGNLKATNREFDKNEGVTEEEIVAEQE ECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC DTNIQVSENPESRQEVKVDKKRDRRRHYRKRRGGKGEEREENAKEAINDLSPSDIPSLED CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC EKINLLPPEEVLENGQTSTLSPSLLSSLLQPPPTLISETINRYRENALFKNAFFLTEEEQ CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCHHH YKPHDKVQELLNEDDDVDFAPYLQEPTFAKEPESSNSGATEQLLGDKTELFENIIEQELK CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH REEQTQEEIFKEIPSENTTSNEIALTNESNLAEYSGELSFPAYKKESENEGEVFFEESQK HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEECHHHH REENEKIVHSENKTDV HHHHHHHCCCCCCCCC >Mature Secondary Structure MDFTREPIIETIVTPKEGYKLVVRSSKGSAQEEYFVDSVEVVSFSQALFFRSMERPKSFL CCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHE VPVADYEILEVREARMVLKNAGLDRSIKIGGGREGNLKATNREFDKNEGVTEEEIVAEQE ECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC DTNIQVSENPESRQEVKVDKKRDRRRHYRKRRGGKGEEREENAKEAINDLSPSDIPSLED CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC EKINLLPPEEVLENGQTSTLSPSLLSSLLQPPPTLISETINRYRENALFKNAFFLTEEEQ CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCHHH YKPHDKVQELLNEDDDVDFAPYLQEPTFAKEPESSNSGATEQLLGDKTELFENIIEQELK CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH REEQTQEEIFKEIPSENTTSNEIALTNESNLAEYSGELSFPAYKKESENEGEVFFEESQK HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEECHHHH REENEKIVHSENKTDV HHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]