Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 45659220

GI number: 45659220

Start: 4172739

End: 4173512

Strand: Reverse

Name: yvrC [H]

Synonym: LIC13403

Alternate gene names: 45659220

Gene position: 4173512-4172739 (Counterclockwise)

Preceding gene: 45659221

Following gene: 45659219

Centisome position: 97.58

GC content: 35.92

Gene sequence:

>774_bases
TTGATCGGACCGAAAAGAATCATCTGTCTTACAGAAGAAACAACCGAGTTATTTTACCTGCTTGGAATAGAAGAACGAAT
CGTAGGAATTTCCGCTTATACAGTTAGACCGCTCAGAGCTAAAAAAGAAAAACCTAAAATTTCTGCGTTTATCAACGGAA
ATATAAAACGAATTAAGGAACTAAAACCGGATCTAGTGATCGGATTTTCAGATATACAATCGGATCTTGCAAAAAATTTG
ATTGAGGAAGGATTGAACGTACTTGTTACAAATCAAAGAACGATTTTGGAAATTTTCGATACCCTATCTCTTTTAGGATC
TATAGTAGGTAAAGGGAACGAAACTCAAAAATTGATTGAAGGTTGGAAAAGAAAGTTAGACGAAATTGAAAGAGTGTATT
CTTCAAAAAGCCAACCATCTGTTTTTTTTCAAGAATGGGATGAACCGATCATAACTGGAATTTCCTGGGTTTCGGAACTC
ATTAAACTCGCTGGTGGAAAAGATTGTTTTGAACATCTCAAAACGAAGTCTTTGGCAAAGGATAGAATCATTTCTGCAAT
AGACGTTGCAAAGGCAAATCCGGAAGTTTATATAGGTTCTTGGTGTGGAAAACCTATGAACTTTGAATGGGTGCAAAAAC
ATCCAGACTGGCAAAACGTAAGTGCAATTCTAAATCATAAAGTTTACGAGTTAGATCCTTCTATTATTCTTCAGCCCGGC
CCAGCATTGTTTGAAGAAGGAATCGATCAACTTGTGAAATTAATTCATTCTTAG

Upstream 100 bases:

>100_bases
TTTAGGAGATACTTCTACTCTTGCAGATCCATCTGTGGTTCAAAAATTGATCGAAGATAAAAAGAAATTTCACAGTTAAC
ATCCGTAAGGTGGTAAAAGT

Downstream 100 bases:

>100_bases
TTTGTTTTAGTTCCTTAAAATTGGGGATAAATTTTAAATACTTTCGTAAGTTTATCCTCTAAAAATTTGAGTGTAAATAA
AAACTATTATTACAGAAAAA

Product: YvrC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MIGPKRIICLTEETTELFYLLGIEERIVGISAYTVRPLRAKKEKPKISAFINGNIKRIKELKPDLVIGFSDIQSDLAKNL
IEEGLNVLVTNQRTILEIFDTLSLLGSIVGKGNETQKLIEGWKRKLDEIERVYSSKSQPSVFFQEWDEPIITGISWVSEL
IKLAGGKDCFEHLKTKSLAKDRIISAIDVAKANPEVYIGSWCGKPMNFEWVQKHPDWQNVSAILNHKVYELDPSIILQPG
PALFEEGIDQLVKLIHS

Sequences:

>Translated_257_residues
MIGPKRIICLTEETTELFYLLGIEERIVGISAYTVRPLRAKKEKPKISAFINGNIKRIKELKPDLVIGFSDIQSDLAKNL
IEEGLNVLVTNQRTILEIFDTLSLLGSIVGKGNETQKLIEGWKRKLDEIERVYSSKSQPSVFFQEWDEPIITGISWVSEL
IKLAGGKDCFEHLKTKSLAKDRIISAIDVAKANPEVYIGSWCGKPMNFEWVQKHPDWQNVSAILNHKVYELDPSIILQPG
PALFEEGIDQLVKLIHS
>Mature_257_residues
MIGPKRIICLTEETTELFYLLGIEERIVGISAYTVRPLRAKKEKPKISAFINGNIKRIKELKPDLVIGFSDIQSDLAKNL
IEEGLNVLVTNQRTILEIFDTLSLLGSIVGKGNETQKLIEGWKRKLDEIERVYSSKSQPSVFFQEWDEPIITGISWVSEL
IKLAGGKDCFEHLKTKSLAKDRIISAIDVAKANPEVYIGSWCGKPMNFEWVQKHPDWQNVSAILNHKVYELDPSIILQPG
PALFEEGIDQLVKLIHS

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 29069; Mature: 29069

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGPKRIICLTEETTELFYLLGIEERIVGISAYTVRPLRAKKEKPKISAFINGNIKRIKE
CCCCCEEEEEECCCHHEEEEEEHHHHHEEEHHHEECHHHHCCCCCCEEEEECCCHHHHHH
LKPDLVIGFSDIQSDLAKNLIEEGLNVLVTNQRTILEIFDTLSLLGSIVGKGNETQKLIE
CCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GWKRKLDEIERVYSSKSQPSVFFQEWDEPIITGISWVSELIKLAGGKDCFEHLKTKSLAK
HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DRIISAIDVAKANPEVYIGSWCGKPMNFEWVQKHPDWQNVSAILNHKVYELDPSIILQPG
HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCEEECCC
PALFEEGIDQLVKLIHS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIGPKRIICLTEETTELFYLLGIEERIVGISAYTVRPLRAKKEKPKISAFINGNIKRIKE
CCCCCEEEEEECCCHHEEEEEEHHHHHEEEHHHEECHHHHCCCCCCEEEEECCCHHHHHH
LKPDLVIGFSDIQSDLAKNLIEEGLNVLVTNQRTILEIFDTLSLLGSIVGKGNETQKLIE
CCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GWKRKLDEIERVYSSKSQPSVFFQEWDEPIITGISWVSELIKLAGGKDCFEHLKTKSLAK
HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DRIISAIDVAKANPEVYIGSWCGKPMNFEWVQKHPDWQNVSAILNHKVYELDPSIILQPG
HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCEEECCC
PALFEEGIDQLVKLIHS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]