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The map label for this gene is ybbC [H]

Identifier: 45657747

GI number: 45657747

Start: 2279518

End: 2280816

Strand: Reverse

Name: ybbC [H]

Synonym: LIC11884

Alternate gene names: 45657747

Gene position: 2280816-2279518 (Counterclockwise)

Preceding gene: 45657751

Following gene: 45657746

Centisome position: 53.33

GC content: 36.57

Gene sequence:

>1299_bases
TTGAGGGATTTTTTTAAACAAAATAGGAATTCTCGGATGCTCAACACAAAAATAAAGAAAAAATTATTTCTCTCAGTTAT
TTTTTTTCTATTTCTACCATCGGTCGCCTGTGCGGAAAAAAGTTTTCGTAAACATATCGCGGACTCAAAACTCATTCCTT
CTGAAATCGAATTTTATTCTAACATTCTTCCCGGACTTTCCGGAAAAAATGTCATTCTAATTACAAACCCATCTGGAATC
GGAAGAAGCCCCGAAAGGATTTTACGAGAATTTAAAAAACACGACGTAAAAATCAAACATCTCATCGGATTGGAACACGG
ATTTTTAGGACTCGAGGAGGACTTCAGTAAATCTCCCGTTACGGTGGATGAATTTTTTAATCTCCCAATCTATCATATCT
ATCGAGTCAAGAACGCAGAACTTCCTACGATTTTGAAAGGAGCCGACGCGATTCTTTTTGATGTGCAAGATATGGGGATG
AGATGTTATACTTATCTAACCGTTTTAAAAAGAATTATGGATGGAATTCCAGATCCTACAAATACGCGACTGATCGTTTT
GGATCACGTAAACCCCGCTCTTTATTTAAAAGGAAGAGGAGAAATGATCGATAAACGTTTCTTAAATTTTGCAGGAGAAT
TCCCTTCTCTTTTTTTTGGAGGTTTGACCTTGGGAGAATCAGCGGTTTATTATAACTCTGAATATTTAGATAAAAAGGTT
CGTTTAGAAGTGGTATCTCCTAAAAACGCAAAACGATCTTTTGATTGGGATAGAGAAGGAATTCCTTGGACTACACCTTC
TCCTAATTTACCAACTGTAGATTCTGCGATCAATTATCTGGGGCTTGTTTTGTTAGAAGGAGTGAACGTTTCTGTGGGAA
GGGGTACAACCGCACCTTTTGTATATTTCGGAGCCCCTTGGATGACAGAGCCCGAAAAGTTAGCGGAAGAATTAAATCAA
AATTCAGGTGGAGAATATTATTATCAGACTGTGTTTTTTAAACCTGTATTTGGTCCTTACAAGAATGAGATTTGTAGAGG
ATTGCGCCTAACGGTAGTAAATCGAAAGTATGATCCTTTAAAAATGGCATTCCAGTTGATCTCCGCTTTAAAATCGAATT
ATAAAGAATTTAAATGGAGATCGTATCCGGATGGAACCTACAATATAGATTTCCTATGGGGAACGGAATCGTTTCGAAAA
ACGATCGACGCCGGAAAAAAATACGATCAATATGCGGAATACTTAAGTTCCATTGAGAAAGAATATAATGAAAAAATTAA
GAAATATTATCTCTACTGA

Upstream 100 bases:

>100_bases
GAACCACAACTGATTGAGAAGGAAATAACTGCTAAGGCTGCGATGAGCCTGGTGGTAGGGAAACGATTCATTGTGTCGTT
TTTCTCCTTGAAGAATAGGT

Downstream 100 bases:

>100_bases
AATTAGGATTCGGTTTTACATTTTACGAACGTTTTTATTTTATACTCTATTCTTATTTTTGAATGTTTCCGTATTTCCAG
AAAGCTGGAAAGAGTATTCT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MRDFFKQNRNSRMLNTKIKKKLFLSVIFFLFLPSVACAEKSFRKHIADSKLIPSEIEFYSNILPGLSGKNVILITNPSGI
GRSPERILREFKKHDVKIKHLIGLEHGFLGLEEDFSKSPVTVDEFFNLPIYHIYRVKNAELPTILKGADAILFDVQDMGM
RCYTYLTVLKRIMDGIPDPTNTRLIVLDHVNPALYLKGRGEMIDKRFLNFAGEFPSLFFGGLTLGESAVYYNSEYLDKKV
RLEVVSPKNAKRSFDWDREGIPWTTPSPNLPTVDSAINYLGLVLLEGVNVSVGRGTTAPFVYFGAPWMTEPEKLAEELNQ
NSGGEYYYQTVFFKPVFGPYKNEICRGLRLTVVNRKYDPLKMAFQLISALKSNYKEFKWRSYPDGTYNIDFLWGTESFRK
TIDAGKKYDQYAEYLSSIEKEYNEKIKKYYLY

Sequences:

>Translated_432_residues
MRDFFKQNRNSRMLNTKIKKKLFLSVIFFLFLPSVACAEKSFRKHIADSKLIPSEIEFYSNILPGLSGKNVILITNPSGI
GRSPERILREFKKHDVKIKHLIGLEHGFLGLEEDFSKSPVTVDEFFNLPIYHIYRVKNAELPTILKGADAILFDVQDMGM
RCYTYLTVLKRIMDGIPDPTNTRLIVLDHVNPALYLKGRGEMIDKRFLNFAGEFPSLFFGGLTLGESAVYYNSEYLDKKV
RLEVVSPKNAKRSFDWDREGIPWTTPSPNLPTVDSAINYLGLVLLEGVNVSVGRGTTAPFVYFGAPWMTEPEKLAEELNQ
NSGGEYYYQTVFFKPVFGPYKNEICRGLRLTVVNRKYDPLKMAFQLISALKSNYKEFKWRSYPDGTYNIDFLWGTESFRK
TIDAGKKYDQYAEYLSSIEKEYNEKIKKYYLY
>Mature_432_residues
MRDFFKQNRNSRMLNTKIKKKLFLSVIFFLFLPSVACAEKSFRKHIADSKLIPSEIEFYSNILPGLSGKNVILITNPSGI
GRSPERILREFKKHDVKIKHLIGLEHGFLGLEEDFSKSPVTVDEFFNLPIYHIYRVKNAELPTILKGADAILFDVQDMGM
RCYTYLTVLKRIMDGIPDPTNTRLIVLDHVNPALYLKGRGEMIDKRFLNFAGEFPSLFFGGLTLGESAVYYNSEYLDKKV
RLEVVSPKNAKRSFDWDREGIPWTTPSPNLPTVDSAINYLGLVLLEGVNVSVGRGTTAPFVYFGAPWMTEPEKLAEELNQ
NSGGEYYYQTVFFKPVFGPYKNEICRGLRLTVVNRKYDPLKMAFQLISALKSNYKEFKWRSYPDGTYNIDFLWGTESFRK
TIDAGKKYDQYAEYLSSIEKEYNEKIKKYYLY

Specific function: Unknown

COG id: COG3876

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008302 [H]

Pfam domain/function: PF07075 DUF1343 [H]

EC number: NA

Molecular weight: Translated: 49880; Mature: 49880

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFFKQNRNSRMLNTKIKKKLFLSVIFFLFLPSVACAEKSFRKHIADSKLIPSEIEFYS
CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH
NILPGLSGKNVILITNPSGIGRSPERILREFKKHDVKIKHLIGLEHGFLGLEEDFSKSPV
HHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCC
TVDEFFNLPIYHIYRVKNAELPTILKGADAILFDVQDMGMRCYTYLTVLKRIMDGIPDPT
CHHHHHCCCEEEEEEECCCCCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
NTRLIVLDHVNPALYLKGRGEMIDKRFLNFAGEFPSLFFGGLTLGESAVYYNSEYLDKKV
CCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECHHHHCCEE
RLEVVSPKNAKRSFDWDREGIPWTTPSPNLPTVDSAINYLGLVLLEGVNVSVGRGTTAPF
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCE
VYFGAPWMTEPEKLAEELNQNSGGEYYYQTVFFKPVFGPYKNEICRGLRLTVVNRKYDPL
EEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCHH
KMAFQLISALKSNYKEFKWRSYPDGTYNIDFLWGTESFRKTIDAGKKYDQYAEYLSSIEK
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH
EYNEKIKKYYLY
HHHHHHHHHCCC
>Mature Secondary Structure
MRDFFKQNRNSRMLNTKIKKKLFLSVIFFLFLPSVACAEKSFRKHIADSKLIPSEIEFYS
CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH
NILPGLSGKNVILITNPSGIGRSPERILREFKKHDVKIKHLIGLEHGFLGLEEDFSKSPV
HHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCC
TVDEFFNLPIYHIYRVKNAELPTILKGADAILFDVQDMGMRCYTYLTVLKRIMDGIPDPT
CHHHHHCCCEEEEEEECCCCCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
NTRLIVLDHVNPALYLKGRGEMIDKRFLNFAGEFPSLFFGGLTLGESAVYYNSEYLDKKV
CCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECHHHHCCEE
RLEVVSPKNAKRSFDWDREGIPWTTPSPNLPTVDSAINYLGLVLLEGVNVSVGRGTTAPF
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCE
VYFGAPWMTEPEKLAEELNQNSGGEYYYQTVFFKPVFGPYKNEICRGLRLTVVNRKYDPL
EEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCHH
KMAFQLISALKSNYKEFKWRSYPDGTYNIDFLWGTESFRKTIDAGKKYDQYAEYLSSIEK
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH
EYNEKIKKYYLY
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]