| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is ybbD [H]
Identifier: 45657290
GI number: 45657290
Start: 1739391
End: 1741208
Strand: Reverse
Name: ybbD [H]
Synonym: LIC11413
Alternate gene names: 45657290
Gene position: 1741208-1739391 (Counterclockwise)
Preceding gene: 45657295
Following gene: 45657289
Centisome position: 40.71
GC content: 35.42
Gene sequence:
>1818_bases TTGAAACAAAACATAACACCTCTACTCCCGGAATTTGTTTTTACAGAATTTCCGGTTTTCTTATTCTGTCAAACTATGAT CCGACGTTTTCTTTTCGTGTCCTTACTTCTTTTGGGTTTTCTAACCATACTCTATTACGTAAGCTCTTATCAACAAGATC TACAAGCAAACAGCTTGGACGGTTATTTAGAATTCCAAGCCAAAGAAATCGTAAACAAGATGAGCCCGGAAGAATTGTCG GGACAAGTAATTCATGTGTCGATTCCTGGCAAAACCTTAGATCAAACCGCAGAGAAAGAAATCGAAGAGATTCTACCTGG GGGAATTATTCTTTTTGGAATCAATTTAGGCACAAAAGAAGAAATCTCAAATCTGAATTTAGAATTACAAAAAAAGAGTA TAGAATTTTCTAAATTGCCTCTTTTGATTTCAGTAGATCAAGAAGGAGGAAGAGTTTTACGTGTGAGAGACGGAGTCACT CAGTTTCCAGGTGCGATGGCTCTTGGCCAAACCAAAAACTCTGACTACGCGTATAAAGTAGGTTTTGTAACTTCTTATCA ACTTAGAAAACTTGGACTGAATTTTGTTTTTGCTCCAGACTTAGATATCAACAACAATCCAGATAATCCAGTGATTAACA CTCGTTCTATGGGGAGTACTCCTGAAATGGTTTCTATCGCAGGAATTGGATACGAAAAAGGAGCAAGAATCGGCGGAGCC ATTCCTACAATCAAACATTTCCCAGGTCACGGAGACACAAACGTAGACAGTCATTTAGGACTTCCAAAAATTGATAAGAC CTTAGAAGAATTGGAAAAAATGGAACTGATTCCATTTCAGGAATCGATCCAACAAGGTGCAGAAGTTGTTATGAGCGCTC ATATCGTATATCCTAAGTTAGATCCTGATTTTCCTGCTACACTTTCCTCTAAAATTCTCAAAGGTATTTTAAGGGAAAGA ATGGGATTCAAAGGTGTGGTCATCACAGACGCAATGGAAATGGATGCAATTGATAAACATTATAAAGATAAGAATCCCGG GGTACTCGCTATATTAGCAGGAGCTGATATACTACTCATGACTAGTTGGGGAAAAACCACCAGAGATATGAAAAATCAAA TTTTGACTGCATACAAAAATGGAATTTTTCAAAAAGGAGAAAGAGATCTTTTAAAAGAAGCGGTATACAGACAAATTTTA TTAAAACTCAAACACGGAATTATATATGAATTTTCTTCTAAAAAATCAGAATCAAAGGAAAAACTATCCGATTTAGAAAT CAAAGAAATCGACTTCTTTCAAAATCAAATTGCACAAAGAGAAAAAAAATTTTTAGAAATATTTTCCTCTAATTTAAACG CAGAAATTTCCAGAGCTTCGATCGTTTCTTTTCCTTCTCTATTTGATCCGAATTCTGTCAAAACAGAAGAGACGATATTT TCAGTGCGCGGAAAAGAATTTGAAACTGCTTTAGAAGAAAAGAATATTCCAAATGTAAATTACTCAAAAATTCCTGTACT TGTAAAACAAAATAAGTTCAAACGAATTGTAGCGGTTACGTTCAGCCAGCTGGAATTGGATCTCGTAGCAAAACTTGCAA AACGTCATTCCAACTTGGAAGTAGTTGCACTTCATTACGGAAGTCCGTTTCTAAAATTGAATACTCTTCCCAACCTTAAA ATTTTATTTTCTTTTTCCCCTACGTTAGAATCTAAAAAAGCTCTTTTGTATTCTGTATTAGAAAGAAAATCTACAATTCC GGTTGTAGATCTGATTTTAAAAGGTGAAAACGAAAAAACCGCGTCCCAACAGCCATGA
Upstream 100 bases:
>100_bases ACCTGCAGTGAGACTATCTCCGAAAAATAGAATTCGAACCGTTTTAGAATCTGAATGAATGGAAGTAAAAAAGAAACAAC TGAAAATAAAAATCATTATC
Downstream 100 bases:
>100_bases TACACTATTCCGGAAATCCGATTTCTAAGGTCGGACGCCCCGGAATTTACATACACTATCCTTATTGCATTCAAAAATGT GAATATTGTGATTTTTATTC
Product: glycosyl hydrolase
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 605; Mature: 605
Protein sequence:
>605_residues MKQNITPLLPEFVFTEFPVFLFCQTMIRRFLFVSLLLLGFLTILYYVSSYQQDLQANSLDGYLEFQAKEIVNKMSPEELS GQVIHVSIPGKTLDQTAEKEIEEILPGGIILFGINLGTKEEISNLNLELQKKSIEFSKLPLLISVDQEGGRVLRVRDGVT QFPGAMALGQTKNSDYAYKVGFVTSYQLRKLGLNFVFAPDLDINNNPDNPVINTRSMGSTPEMVSIAGIGYEKGARIGGA IPTIKHFPGHGDTNVDSHLGLPKIDKTLEELEKMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILKGILRER MGFKGVVITDAMEMDAIDKHYKDKNPGVLAILAGADILLMTSWGKTTRDMKNQILTAYKNGIFQKGERDLLKEAVYRQIL LKLKHGIIYEFSSKKSESKEKLSDLEIKEIDFFQNQIAQREKKFLEIFSSNLNAEISRASIVSFPSLFDPNSVKTEETIF SVRGKEFETALEEKNIPNVNYSKIPVLVKQNKFKRIVAVTFSQLELDLVAKLAKRHSNLEVVALHYGSPFLKLNTLPNLK ILFSFSPTLESKKALLYSVLERKSTIPVVDLILKGENEKTASQQP
Sequences:
>Translated_605_residues MKQNITPLLPEFVFTEFPVFLFCQTMIRRFLFVSLLLLGFLTILYYVSSYQQDLQANSLDGYLEFQAKEIVNKMSPEELS GQVIHVSIPGKTLDQTAEKEIEEILPGGIILFGINLGTKEEISNLNLELQKKSIEFSKLPLLISVDQEGGRVLRVRDGVT QFPGAMALGQTKNSDYAYKVGFVTSYQLRKLGLNFVFAPDLDINNNPDNPVINTRSMGSTPEMVSIAGIGYEKGARIGGA IPTIKHFPGHGDTNVDSHLGLPKIDKTLEELEKMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILKGILRER MGFKGVVITDAMEMDAIDKHYKDKNPGVLAILAGADILLMTSWGKTTRDMKNQILTAYKNGIFQKGERDLLKEAVYRQIL LKLKHGIIYEFSSKKSESKEKLSDLEIKEIDFFQNQIAQREKKFLEIFSSNLNAEISRASIVSFPSLFDPNSVKTEETIF SVRGKEFETALEEKNIPNVNYSKIPVLVKQNKFKRIVAVTFSQLELDLVAKLAKRHSNLEVVALHYGSPFLKLNTLPNLK ILFSFSPTLESKKALLYSVLERKSTIPVVDLILKGENEKTASQQP >Mature_605_residues MKQNITPLLPEFVFTEFPVFLFCQTMIRRFLFVSLLLLGFLTILYYVSSYQQDLQANSLDGYLEFQAKEIVNKMSPEELS GQVIHVSIPGKTLDQTAEKEIEEILPGGIILFGINLGTKEEISNLNLELQKKSIEFSKLPLLISVDQEGGRVLRVRDGVT QFPGAMALGQTKNSDYAYKVGFVTSYQLRKLGLNFVFAPDLDINNNPDNPVINTRSMGSTPEMVSIAGIGYEKGARIGGA IPTIKHFPGHGDTNVDSHLGLPKIDKTLEELEKMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILKGILRER MGFKGVVITDAMEMDAIDKHYKDKNPGVLAILAGADILLMTSWGKTTRDMKNQILTAYKNGIFQKGERDLLKEAVYRQIL LKLKHGIIYEFSSKKSESKEKLSDLEIKEIDFFQNQIAQREKKFLEIFSSNLNAEISRASIVSFPSLFDPNSVKTEETIF SVRGKEFETALEEKNIPNVNYSKIPVLVKQNKFKRIVAVTFSQLELDLVAKLAKRHSNLEVVALHYGSPFLKLNTLPNLK ILFSFSPTLESKKALLYSVLERKSTIPVVDLILKGENEKTASQQP
Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=335, Percent_Identity=27.7611940298507, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1788453, Length=289, Percent_Identity=25.9515570934256, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: 3.2.1.52
Molecular weight: Translated: 67936; Mature: 67936
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQNITPLLPEFVFTEFPVFLFCQTMIRRFLFVSLLLLGFLTILYYVSSYQQDLQANSLD CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GYLEFQAKEIVNKMSPEELSGQVIHVSIPGKTLDQTAEKEIEEILPGGIILFGINLGTKE CCEEHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH EISNLNLELQKKSIEFSKLPLLISVDQEGGRVLRVRDGVTQFPGAMALGQTKNSDYAYKV HHHCCCEEEEECCCCHHHCCEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCEEEEE GFVTSYQLRKLGLNFVFAPDLDINNNPDNPVINTRSMGSTPEMVSIAGIGYEKGARIGGA EEEEHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHCCCCCCCC IPTIKHFPGHGDTNVDSHLGLPKIDKTLEELEKMELIPFQESIQQGAEVVMSAHIVYPKL CCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCC DPDFPATLSSKILKGILRERMGFKGVVITDAMEMDAIDKHYKDKNPGVLAILAGADILLM CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCEEEEEECCCEEEE TSWGKTTRDMKNQILTAYKNGIFQKGERDLLKEAVYRQILLKLKHGIIYEFSSKKSESKE ECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH KLSDLEIKEIDFFQNQIAQREKKFLEIFSSNLNAEISRASIVSFPSLFDPNSVKTEETIF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCCCCCCCCHHHHH SVRGKEFETALEEKNIPNVNYSKIPVLVKQNKFKRIVAVTFSQLELDLVAKLAKRHSNLE HHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCCE VVALHYGSPFLKLNTLPNLKILFSFSPTLESKKALLYSVLERKSTIPVVDLILKGENEKT EEEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC ASQQP CCCCC >Mature Secondary Structure MKQNITPLLPEFVFTEFPVFLFCQTMIRRFLFVSLLLLGFLTILYYVSSYQQDLQANSLD CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GYLEFQAKEIVNKMSPEELSGQVIHVSIPGKTLDQTAEKEIEEILPGGIILFGINLGTKE CCEEHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH EISNLNLELQKKSIEFSKLPLLISVDQEGGRVLRVRDGVTQFPGAMALGQTKNSDYAYKV HHHCCCEEEEECCCCHHHCCEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCEEEEE GFVTSYQLRKLGLNFVFAPDLDINNNPDNPVINTRSMGSTPEMVSIAGIGYEKGARIGGA EEEEHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHCCCCCCCC IPTIKHFPGHGDTNVDSHLGLPKIDKTLEELEKMELIPFQESIQQGAEVVMSAHIVYPKL CCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCC DPDFPATLSSKILKGILRERMGFKGVVITDAMEMDAIDKHYKDKNPGVLAILAGADILLM CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCEEEEEECCCEEEE TSWGKTTRDMKNQILTAYKNGIFQKGERDLLKEAVYRQILLKLKHGIIYEFSSKKSESKE ECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH KLSDLEIKEIDFFQNQIAQREKKFLEIFSSNLNAEISRASIVSFPSLFDPNSVKTEETIF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCCCCCCCCHHHHH SVRGKEFETALEEKNIPNVNYSKIPVLVKQNKFKRIVAVTFSQLELDLVAKLAKRHSNLE HHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCCE VVALHYGSPFLKLNTLPNLKILFSFSPTLESKKALLYSVLERKSTIPVVDLILKGENEKT EEEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC ASQQP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8011666; 9274029; 9384377 [H]