Click here to switch to the map view.

The map label for this gene is fliR

Identifier: 45657252

GI number: 45657252

Start: 1690089

End: 1690868

Strand: Direct

Name: fliR

Synonym: LIC11374

Alternate gene names: 45657252

Gene position: 1690089-1690868 (Clockwise)

Preceding gene: 45657251

Following gene: 45657253

Centisome position: 39.51

GC content: 38.46

Gene sequence:

>780_bases
ATGGAATACTTTATCAATCACTTTCAGGTTTTTTTACTGATCCTTTCGAGGTTGATGGGGTTGTTGTCCGTTGCGCCTGT
TTTTTCGTATCCTTCGATTGGCGTTCCTCAAAAGATGATTTTTTCCTTTTTAGTTTCAGTGATTTTATTTCCGGTGATTG
CAGGCTTTTTACCTCCGGTTCCGGGGGATATGGGGAGTTACGGACTTGTGGTAATCGCTGAAGCTTTGATCGGAATTCTT
TTAGGTTTTTTGATCAGTTTGATTTTTGCAGCCTTTCAGATGGCGGGTGAATTTTTTAACGTTCAGTTAGGTTTTGGTTA
TGCGGAGATTTTAGATCCGGTGACTCAAACCAGTTTACCAGTTATTAGTACTTTAAAGAATTTATTGGGAATGTTGCTTT
TTTTGACGTTAGGTGCTTATCGAATCATGTTCGAAAGTCTTGCCTATTCTTTTGAAAAAATTCAGGTTTTACGATTTGTT
CCGGAAATTCAAAACGGAATTTATAAGGCTATGGAAGACGCGGTAGGAGCAATGTTTTTTGTAGCGTTTCGGTTATCTCT
TCCAGTTTTGGGAATTATATTACTCGTAACCGTTTCCGAAGCTTTGATGGGTAAGGCGGCTCCACAACTCAACATTTTGC
AATTATCTTTTCCGATTAAAGTTACGATTGGTCTGATCGTGATGATTTTTATCACTCCTTACCTGGTCTCTCAAATGGGA
GCGGCTTTTGATTTATCCTTTGATAAGGTAAATTTAATGTTACAAGAGTGGCCGAAATGA

Upstream 100 bases:

>100_bases
AATCTTTATCGTGATTGTGATTTTTTCTTCCTGGATGATCCAGACGATGACCGATTATACCCGAAACCTTTTTTTGATGA
TCGAAAAATTTTAGTATATT

Downstream 100 bases:

>100_bases
AAAAGGCGATTTGGTCGAGAACAAAAAAACTGGTGGTTGTTTTCGTGCAAAATCCTAAAAGATTTTTTATAAGAATTTTC
TACAAGAACCTTTCTAGGGT

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPVPGDMGSYGLVVIAEALIGIL
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYKAMEDAVGAMFFVAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMG
AAFDLSFDKVNLMLQEWPK

Sequences:

>Translated_259_residues
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPVPGDMGSYGLVVIAEALIGIL
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYKAMEDAVGAMFFVAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMG
AAFDLSFDKVNLMLQEWPK
>Mature_259_residues
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPVPGDMGSYGLVVIAEALIGIL
LGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFV
PEIQNGIYKAMEDAVGAMFFVAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMG
AAFDLSFDKVNLMLQEWPK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=257, Percent_Identity=24.9027237354086, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28570; Mature: 28570

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PGDMGSYGLVVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCH
VISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
AAFDLSFDKVNLMLQEWPK
CHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PGDMGSYGLVVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCH
VISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
AAFDLSFDKVNLMLQEWPK
CHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]