Click here to switch to the map view.

The map label for this gene is rodA

Identifier: 45657145

GI number: 45657145

Start: 1558942

End: 1560465

Strand: Direct

Name: rodA

Synonym: LIC11262

Alternate gene names: 45657145

Gene position: 1558942-1560465 (Clockwise)

Preceding gene: 45657144

Following gene: 45657146

Centisome position: 36.45

GC content: 37.93

Gene sequence:

>1524_bases
TTGGACAGGAGGGAACTCTTGAAGCCAGATAAGTCCATAGAAAAGATAGATTACTTTTTAGTAATTTCGGTAGTAATTGT
CGTACTTTGTAGCGTAACTACTTTATATAGCCAGGAAGTGAATTTTGAAGATGGGCCCGGGAAATGGTATCGTCAGTTAT
TTTATTTTATCATCGGGCTTGCGATCATGTATTTTGTATCTAGAGTCAACTATCAGTTGTTAGGTGCTTATGCTCTCGTG
ATCTATGTGTTTACGGTTTTTCTATTGATGATTACTCTAATTCCTGGAATTGGTTATTTACCTTCAGGAAGGGGAGCACG
TTCTTGGATCAAACTAGGACCCGTGGGAATTCAGGCTTCCGAGTTTGCGAAATTATCCACTGTAATTCTTTTGGGACAGT
TTATGGTTTTAAAAGAAAAGGATATGAGAAATCTAGTCGTCTTATCGATTCCGTTCATCATCGTAATCGTTCCAATGATA
TTTATATTGTTACAGCCAGATTTTGGAACTGCGGTATCTTTTTTGCCAATATTGTTCACGATGCTCTTTTTAGGAGGAGC
AGATATATTACATATAGGATCCTTGCTTGCGTTTGGAGGAATTACGCTCATGGTTCCAATGTTTGTAGAATATTCTAAAT
TAACTTTGATCAACGACATCTCTGACTTTTTACAAAGAACTGGAAAGACTGATCTTTTATCTGTGGTCAATCGACTTGGT
GGAAAGATATGGCTCGCTCTTGACGGAAAGGATGTAAAAGCGGCCAACCTAACACCTAAAACTCTAAACGCGTTACAAGA
AGTAGTGGATCAGGTAGTAGAGGTAGAAGGAGGATTTTTCTTTAAGATTTTTTCTAATCAAAAATTACTTTTGACCTTTG
GGGCTTTATTTTTAATTGCGAGTATAGTGATGGTGGGAATTCGAATTGCAAGAGGAAGTAAAACATTAAGACAATATTAT
ATACCTCTTGGAATTTTGGGAATCAGTTTAATTTCTGCGGTTGTAGTAATGAAAACCGTTCCGTTTCGAGAAAACCAAGT
CATTCGATTGACCGCATTTTTAAATCCGGAGGAATTTAAACAAGGTGCCGGTTATCATCTGAGAGCTTCTAAACCTGCGG
TTGGATCGGGAAGATTTTTCGGAAAAGGGCTGATGAATGCAGAAATGACCGAAGGAAGAATTCCACACGTGCCAGAATCC
AGCACTGATTTTATTTTTGCTTCCTGGGCGGAACAAACCGGGTTTTTAGGATCTGTATTTTTATTATTCTTTTTATTTTC
GATACCACTTCGAGGACTTCAGATCAGTTATGAAAGTAAGGATCGGTTTGGATCCTTACTTGCGTCTGGGATCGTAGCAT
TACTTTTTTATCATATGGCAATCAATATAGGAATTGTAATTGGATTGATGCCGGTGACTGGGATCCCTTTGTCTTTTATG
AGTTACGGAGGATCACATTTAGTCATGTCTATGACCGCGGTTGGAATTATACTTTCGATCAAAAGTAGAAAACACGCAAA
TTAA

Upstream 100 bases:

>100_bases
GGAGCTGCTGGAGCTGCACCTGTTGCAAGAGAAATGTTTCATGCGGCTTTTCCACCGGGAACATTCAAAAAGACGCAAGA
AGTAAATCCTCAACCTAAGA

Downstream 100 bases:

>100_bases
AAGATTTTGTGTATCTCTTCGATCCGCGTTGAAAAAATGCGTTTATTATCGAATACATTATATTTAGTATTAGTGCAAAT
TTTTCTAAGTTTGTTAATTT

Product: RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MDRRELLKPDKSIEKIDYFLVISVVIVVLCSVTTLYSQEVNFEDGPGKWYRQLFYFIIGLAIMYFVSRVNYQLLGAYALV
IYVFTVFLLMITLIPGIGYLPSGRGARSWIKLGPVGIQASEFAKLSTVILLGQFMVLKEKDMRNLVVLSIPFIIVIVPMI
FILLQPDFGTAVSFLPILFTMLFLGGADILHIGSLLAFGGITLMVPMFVEYSKLTLINDISDFLQRTGKTDLLSVVNRLG
GKIWLALDGKDVKAANLTPKTLNALQEVVDQVVEVEGGFFFKIFSNQKLLLTFGALFLIASIVMVGIRIARGSKTLRQYY
IPLGILGISLISAVVVMKTVPFRENQVIRLTAFLNPEEFKQGAGYHLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPES
STDFIFASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFM
SYGGSHLVMSMTAVGIILSIKSRKHAN

Sequences:

>Translated_507_residues
MDRRELLKPDKSIEKIDYFLVISVVIVVLCSVTTLYSQEVNFEDGPGKWYRQLFYFIIGLAIMYFVSRVNYQLLGAYALV
IYVFTVFLLMITLIPGIGYLPSGRGARSWIKLGPVGIQASEFAKLSTVILLGQFMVLKEKDMRNLVVLSIPFIIVIVPMI
FILLQPDFGTAVSFLPILFTMLFLGGADILHIGSLLAFGGITLMVPMFVEYSKLTLINDISDFLQRTGKTDLLSVVNRLG
GKIWLALDGKDVKAANLTPKTLNALQEVVDQVVEVEGGFFFKIFSNQKLLLTFGALFLIASIVMVGIRIARGSKTLRQYY
IPLGILGISLISAVVVMKTVPFRENQVIRLTAFLNPEEFKQGAGYHLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPES
STDFIFASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFM
SYGGSHLVMSMTAVGIILSIKSRKHAN
>Mature_507_residues
MDRRELLKPDKSIEKIDYFLVISVVIVVLCSVTTLYSQEVNFEDGPGKWYRQLFYFIIGLAIMYFVSRVNYQLLGAYALV
IYVFTVFLLMITLIPGIGYLPSGRGARSWIKLGPVGIQASEFAKLSTVILLGQFMVLKEKDMRNLVVLSIPFIIVIVPMI
FILLQPDFGTAVSFLPILFTMLFLGGADILHIGSLLAFGGITLMVPMFVEYSKLTLINDISDFLQRTGKTDLLSVVNRLG
GKIWLALDGKDVKAANLTPKTLNALQEVVDQVVEVEGGFFFKIFSNQKLLLTFGALFLIASIVMVGIRIARGSKTLRQYY
IPLGILGISLISAVVVMKTVPFRENQVIRLTAFLNPEEFKQGAGYHLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPES
STDFIFASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFM
SYGGSHLVMSMTAVGIILSIKSRKHAN

Specific function: This is one of the proteins responsible for the rod shape of the cell [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=162, Percent_Identity=40.1234567901235, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1786277, Length=182, Percent_Identity=34.0659340659341, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 56059; Mature: 56059

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCHHHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure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HCCCCHHHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]