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The map label for this gene is 45657105

Identifier: 45657105

GI number: 45657105

Start: 1510799

End: 1511737

Strand: Direct

Name: 45657105

Synonym: LIC11222

Alternate gene names: NA

Gene position: 1510799-1511737 (Clockwise)

Preceding gene: 45657104

Following gene: 45657107

Centisome position: 35.32

GC content: 34.4

Gene sequence:

>939_bases
ATGATAAATAGAGTTCTCGGTTTATTTTTAATCATAGGGATTTTAATTTTTGTACTGAGTTTTTTTTCTACTTCCGGTCA
AAGTGAAGATCAGTATCAGGCAGAAGGACCTTCCCGTATTCAATCCGTTGTGATCTTAATTCGAGAGTTTTTGTGGGGGA
AGGCATCTCATTCGAATGCAGCTGCGTCAGTTACTACAGCTGAAAATCCTCAAGAAATTTTTAAACGAGCGTATCGTGCC
AACGAAAAAAAGGCCTATCTCAATGCAGTTGAAGAATATTCTAAGTATTTAAAGTTAGTTCCTAACGACGCGTCTGCATA
CTATAATCGAGGTTTGGTTCATTATACTTTAAAACGATATAATGACGCCGTGAGAGATTTTGAAAAGGCCGTGGAAATTG
ATCCAAGTAAGACATATGCATTTTTATATAAAGGTTACGCATACGAAATGATCAGCGACTGTAAACAGGCTATTGAAGAT
TTTGAAAAAGCGATTTCGCTTGGAGAAAATAAAAATGCGGAACTTTATGGACATAAGGCGCGTTGTGAAAATCGCAGCAA
AAATTACGACGAAGGATTTCAAGATGCTCTGAAAGCTTTGAATATTGATAAAAAAAACGCATACGCTTTTTTTGAATTGG
CTTATGCTCAATACGGTTTAAAAAAGTATTCGGATTCTGTTGAAAGTTATACAAAAGTTTTACAATTCAGTCCGAATGAT
GGAGTGGCTTTTCATAATAGAGGTCTTGCATTGGTTTTTTTAAATAAAATCCCTTCGGCTTGTAAGGATTTTCAAAGGTC
TTCGGAAATAGGTTATTTCGATTCTAAAAAAAAATGGATGAATATTGTAAATGATCTCTATAGGAAATTTTTTGCTGGCC
CTATAAAATTGAGCATATTGAACTTTTATCACAAAATTCTATTTCAGAAGAGGTATTAG

Upstream 100 bases:

>100_bases
TTAAGTTTTTACTTTTTAAAAGTTCAAAAAAGAGTGTTTTTGGAAATTTTTTATTTAATAAAAAGTTGAATTTTAAGAGA
ATTAGGTTTCTCTTATTTGA

Downstream 100 bases:

>100_bases
TATTTCTTTATATAATTCTGTTTGATTTTGAAAATGTGGGAACTCTTACAATTTAGAATTTTACAGATTGATTTTGAAAA
TGTTACTTATTTAGAAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MINRVLGLFLIIGILIFVLSFFSTSGQSEDQYQAEGPSRIQSVVILIREFLWGKASHSNAAASVTTAENPQEIFKRAYRA
NEKKAYLNAVEEYSKYLKLVPNDASAYYNRGLVHYTLKRYNDAVRDFEKAVEIDPSKTYAFLYKGYAYEMISDCKQAIED
FEKAISLGENKNAELYGHKARCENRSKNYDEGFQDALKALNIDKKNAYAFFELAYAQYGLKKYSDSVESYTKVLQFSPND
GVAFHNRGLALVFLNKIPSACKDFQRSSEIGYFDSKKKWMNIVNDLYRKFFAGPIKLSILNFYHKILFQKRY

Sequences:

>Translated_312_residues
MINRVLGLFLIIGILIFVLSFFSTSGQSEDQYQAEGPSRIQSVVILIREFLWGKASHSNAAASVTTAENPQEIFKRAYRA
NEKKAYLNAVEEYSKYLKLVPNDASAYYNRGLVHYTLKRYNDAVRDFEKAVEIDPSKTYAFLYKGYAYEMISDCKQAIED
FEKAISLGENKNAELYGHKARCENRSKNYDEGFQDALKALNIDKKNAYAFFELAYAQYGLKKYSDSVESYTKVLQFSPND
GVAFHNRGLALVFLNKIPSACKDFQRSSEIGYFDSKKKWMNIVNDLYRKFFAGPIKLSILNFYHKILFQKRY
>Mature_312_residues
MINRVLGLFLIIGILIFVLSFFSTSGQSEDQYQAEGPSRIQSVVILIREFLWGKASHSNAAASVTTAENPQEIFKRAYRA
NEKKAYLNAVEEYSKYLKLVPNDASAYYNRGLVHYTLKRYNDAVRDFEKAVEIDPSKTYAFLYKGYAYEMISDCKQAIED
FEKAISLGENKNAELYGHKARCENRSKNYDEGFQDALKALNIDKKNAYAFFELAYAQYGLKKYSDSVESYTKVLQFSPND
GVAFHNRGLALVFLNKIPSACKDFQRSSEIGYFDSKKKWMNIVNDLYRKFFAGPIKLSILNFYHKILFQKRY

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 35988; Mature: 35988

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRVLGLFLIIGILIFVLSFFSTSGQSEDQYQAEGPSRIQSVVILIREFLWGKASHSNA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
AASVTTAENPQEIFKRAYRANEKKAYLNAVEEYSKYLKLVPNDASAYYNRGLVHYTLKRY
CEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH
NDAVRDFEKAVEIDPSKTYAFLYKGYAYEMISDCKQAIEDFEKAISLGENKNAELYGHKA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHH
RCENRSKNYDEGFQDALKALNIDKKNAYAFFELAYAQYGLKKYSDSVESYTKVLQFSPND
HHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GVAFHNRGLALVFLNKIPSACKDFQRSSEIGYFDSKKKWMNIVNDLYRKFFAGPIKLSIL
CCEEECCCEEEEEHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
NFYHKILFQKRY
HHHHHHHHHCCC
>Mature Secondary Structure
MINRVLGLFLIIGILIFVLSFFSTSGQSEDQYQAEGPSRIQSVVILIREFLWGKASHSNA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
AASVTTAENPQEIFKRAYRANEKKAYLNAVEEYSKYLKLVPNDASAYYNRGLVHYTLKRY
CEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH
NDAVRDFEKAVEIDPSKTYAFLYKGYAYEMISDCKQAIEDFEKAISLGENKNAELYGHKA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHH
RCENRSKNYDEGFQDALKALNIDKKNAYAFFELAYAQYGLKKYSDSVESYTKVLQFSPND
HHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GVAFHNRGLALVFLNKIPSACKDFQRSSEIGYFDSKKKWMNIVNDLYRKFFAGPIKLSIL
CCEEECCCEEEEEHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
NFYHKILFQKRY
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1368342; 8905231 [H]