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The map label for this gene is rpoH

Identifier: 45358923

GI number: 45358923

Start: 1339035

End: 1339271

Strand: Direct

Name: rpoH

Synonym: MMP1360

Alternate gene names: 45358923

Gene position: 1339035-1339271 (Clockwise)

Preceding gene: 45358918

Following gene: 45358924

Centisome position: 80.61

GC content: 39.66

Gene sequence:

>237_bases
GTGAAAATATCGTCACATGAAATGGTTCCGACACATGAGATTATTCCAAGAGAAGAAATACCCCTTTTACTCGAAAAATA
CAGTATAAAAATGCAGCAATTCCCAAAATTGCTCGATACCGATCCCCTCGTGCTTGAAATTGGAGCAACACCTGGAGACG
TTGTAAAAATAACCAGAATGAGCCCTACCGCAGGCGAATCTACCTATTACAGATTAGTAATAGCAACTTCACTCTAA

Upstream 100 bases:

>100_bases
TAGAAAATAATATATATGAGTTACCACTATTTTTCATGATATTAATATTATACGCATAAGTTTATTTTTATAACTATTTT
AAACAAATGGAGGCCAAATT

Downstream 100 bases:

>100_bases
CTGCTGGTTAATACCTGCTAAATATTTTTAAAATTTAAAATAAGCTATTAGTCCTTTATCTAAAATCTATGGGGGAAAAT
CATGGAATCCCGTGTCGTTG

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRMSPTAGESTYYRLVIATSL

Sequences:

>Translated_78_residues
MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRMSPTAGESTYYRLVIATSL
>Mature_78_residues
MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRMSPTAGESTYYRLVIATSL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOH_METMP (P61519)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988480.1
- ProteinModelPortal:   P61519
- SMR:   P61519
- GeneID:   2762445
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1360
- NMPDR:   fig|267377.1.peg.1360
- HOGENOM:   HBG496846
- OMA:   IKRKSPT
- ProtClustDB:   PRK09570
- BioCyc:   MMAR267377:MMP1360-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00025
- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- Gene3D:   G3DSA:3.90.940.20
- ProDom:   PD005155

Pfam domain/function: PF01191 RNA_pol_Rpb5_C; SSF55287 RNApol_RPB5_like

EC number: =2.7.7.6

Molecular weight: Translated: 8782; Mature: 8782

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCHHCCCCCEEEEECCCCCCEEEEEEC
SPTAGESTYYRLVIATSL
CCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCHHCCCCCEEEEECCCCCCEEEEEEC
SPTAGESTYYRLVIATSL
CCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA