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The map label for this gene is rpoN [H]

Identifier: 45358889

GI number: 45358889

Start: 1309208

End: 1309414

Strand: Direct

Name: rpoN [H]

Synonym: MMP1326

Alternate gene names: 45358889

Gene position: 1309208-1309414 (Clockwise)

Preceding gene: 45358888

Following gene: 45358890

Centisome position: 78.81

GC content: 30.92

Gene sequence:

>207_bases
GTGATATTTCCAATCAGATGTTTTTCTTGTGGGAATGTAATTTCTGAAGTTTATGAAGAATACAGAACTAGACTCAAAAA
TGGCGAAAACCCAGAAGAAATTTTAAACGATTTAGAAATCAAAAAATACTGTTGTAGAAGAATGTTCGCATCCCACAGAT
TGGACAATGACAGAGAATTATTTGATGATATCGTCGAATATAAATAA

Upstream 100 bases:

>100_bases
CACACAAACCAAGTAAGTCCTCAAAAGGTCCAAGAGCTAAAAGACAGAAATCATACAGATAATTATTTTTCTTTCCCTTT
ACGTTTTTTAGGTGGTAATA

Downstream 100 bases:

>100_bases
TTACCTTATTATTTACTTATTACCTATCTATTCAGACGGGGCCGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCG
TGCAACCCGAGTTCGAATCT

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASHRLDNDRELFDDIVEYK

Sequences:

>Translated_68_residues
MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASHRLDNDRELFDDIVEYK
>Mature_68_residues
MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASHRLDNDRELFDDIVEYK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- ProDom:   PD006539 [H]

Pfam domain/function: PF01194 RNA_pol_N [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8270; Mature: 8270

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS01112 RNA_POL_N_8KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASHRLDNDREL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FDDIVEYK
HHHHHCCC
>Mature Secondary Structure
MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASHRLDNDREL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FDDIVEYK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA