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The map label for this gene is rpoK

Identifier: 45358890

GI number: 45358890

Start: 1309563

End: 1309736

Strand: Direct

Name: rpoK

Synonym: MMP1327

Alternate gene names: NA

Gene position: 1309563-1309736 (Clockwise)

Preceding gene: 45358889

Following gene: 45358891

Centisome position: 78.84

GC content: 36.78

Gene sequence:

>174_bases
ATGAAATTAACCAAATTTGAAACTGCGCGATTAATCGGTGCAAGATCCCTCCAAATTTCTGATGGTGCTCCACTCGCAAT
CGAATCAGAAAAGACTTCATCGTTAGATCTAGCAGATGATGAAGTAAAACAGGGTAAACTCCCATTATGTGTTAAAAAAC
AGGCTAAAAATTAA

Upstream 100 bases:

>100_bases
GTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAATCTCGGCGGCCCCACTTTTTATTAATTTATA
ACGTCCTTTTGGGTGATTTT

Downstream 100 bases:

>100_bases
ATAACTATTTTAAATCTTTTGGGGGATTTTCGTGGAAAACAGCACATCCATAAAAAGGATAACTGCAAAAAAGGTTTTTA
AAGACTCAAAAATCCAAGTA

Product: RNA polymerase Rpb6

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 57

Protein sequence:

>57_residues
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN

Sequences:

>Translated_57_residues
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN
>Mature_57_residues
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN

Specific function: Unknown

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.6

Molecular weight: Translated: 6186; Mature: 6186

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN
CCCCCCCCEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCHHCCCCCEEECCCCCC
>Mature Secondary Structure
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN
CCCCCCCCEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCHHCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA