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The map label for this gene is rpl18e

Identifier: 45358886

GI number: 45358886

Start: 1307955

End: 1308317

Strand: Direct

Name: rpl18e

Synonym: MMP1323

Alternate gene names: 45358886

Gene position: 1307955-1308317 (Clockwise)

Preceding gene: 45358885

Following gene: 45358887

Centisome position: 78.74

GC content: 35.81

Gene sequence:

>363_bases
ATGAAAAAAATCATGTCAACAAACCCAAAAACTCCTGAATTGATTCAGAAGTTAAAAGAAGAATCATTCAAAAACAGCGC
ACCAATCTGGAAAGATGTTGCTAAAAAGTTAGCTAAACCAGCTAGAAAAAAAGTTGAAGTAAACGTAAGCAAAATCAGCA
GATATGCATCAGAAGGCGATGTATTATTAATTCCAGGCAAAGTACTCGGTGCTGGGTCATTAAAAGTAAACGTAACCGTT
GCAGCATTTTCATTCTCAGAAACTGCGAAATCAGCAATTGAAGCTGTAGGCGGAAAATGTTTAACAATCGAAGAACTTAT
TGCAGAAAACCCTAAAGGTTCTAAAGTAACCATTATGGCGTAA

Upstream 100 bases:

>100_bases
TCTTATTAGAATTAGAAGGCCAAGAATTAAGTGACGAAAATTAATTACTCTTTCTTCCAAATTATTGGAAATTATGAATC
AATATCATAAGGGTGAATTT

Downstream 100 bases:

>100_bases
TTAAACACGAAGGTGGAATTATGGTTGTTGTAAACGCTGAAAATGCAGTTGTTGGAAGATTAGCTTCATACGTTGCTAAA
CTTGCACTAAGCGGTGAAGA

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKKIMSTNPKTPELIQKLKEESFKNSAPIWKDVAKKLAKPARKKVEVNVSKISRYASEGDVLLIPGKVLGAGSLKVNVTV
AAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIMA

Sequences:

>Translated_120_residues
MKKIMSTNPKTPELIQKLKEESFKNSAPIWKDVAKKLAKPARKKVEVNVSKISRYASEGDVLLIPGKVLGAGSLKVNVTV
AAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIMA
>Mature_120_residues
MKKIMSTNPKTPELIQKLKEESFKNSAPIWKDVAKKLAKPARKKVEVNVSKISRYASEGDVLLIPGKVLGAGSLKVNVTV
AAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIMA

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18E_METMP (Q6LXM7)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988443.1
- ProteinModelPortal:   Q6LXM7
- SMR:   Q6LXM7
- GeneID:   2761511
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1323
- NMPDR:   fig|267377.1.peg.1323
- HOGENOM:   HBG392438
- OMA:   SKINRYT
- ProtClustDB:   PRK04005
- BioCyc:   MMAR267377:MMP1323-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00329
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 12871; Mature: 12871

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS01106 RIBOSOMAL_L18E; PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIMSTNPKTPELIQKLKEESFKNSAPIWKDVAKKLAKPARKKVEVNVSKISRYASEGD
CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHCCCCC
VLLIPGKVLGAGSLKVNVTVAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIMA
EEEECCCEECCCCEEEEEEEEEEECHHHHHHHHHHHCCCEEEHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MKKIMSTNPKTPELIQKLKEESFKNSAPIWKDVAKKLAKPARKKVEVNVSKISRYASEGD
CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHCCCCC
VLLIPGKVLGAGSLKVNVTVAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIMA
EEEECCCEECCCCEEEEEEEEEEECHHHHHHHHHHHCCCEEEHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA