| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is appF [H]
Identifier: 37680922
GI number: 37680922
Start: 2782415
End: 2783410
Strand: Direct
Name: appF [H]
Synonym: VV2738
Alternate gene names: 37680922
Gene position: 2782415-2783410 (Clockwise)
Preceding gene: 37680921
Following gene: 37680923
Centisome position: 82.95
GC content: 47.79
Gene sequence:
>996_bases ATGAGCAAAGAATATGGCGAGCTACTGATTGAAGGTAAAAATGTCGTCAAAGACTTTCCCCTCAACAGTAATGCTCTAAA ACAAACCAAGATGCGTGCGATCAACGACGTGTCGTTCAAAATGTACAAAGCACGTGGTCTGTCTGTCGTGGGTGAATCTG GTTCAGGCAAATCCACGACAGCCAAAATGATTGCCAAGATGTACGCCCCAACGAATGGTGTCATCGAATACAAAGGCCGT GATATTCAAGAGATCACATCAAAGAAAGATCTCATGACCTACCGTGAAGGGATCCAAATGGTGTGGCAAGACCCGTTTGG TTCTCTCAACCCAACACATAATATCTTCCACCATATTGCGCGCCCGCTACTGATCCACAAAAAGGTCGCACCGGGCAACA AGAAAGAGTTGGAAGAACGCGTATACGACCTGCTTGAACAAGTGGGCTTGATTCCACCGAAAGCCACTGCAGAAAAGTTT CCGCATCAGCTTTCTGGTGGTCAGCGTCAGCGTGTCAACTTGGCGCGTAACATTGCTGTAGGCGCAGAAGTGGTGCTTGC CGACGAACCGACCTCAATGCTGGACGTATCGATTCGCGCAGGTGTCCTTAACTTGATGGAAGAGATGAAGTTCGAAAAAC AGATGTCTCTTCTTTACATCACGCACGACATCGCAACGGCTCGTTATATCGCGGAAGATCTGGCGGTAATGTATGTGGGA CACATGGTGGAATGGGGGGATACCGATGAGATCATTCACGATCCTCAACACCCATACACGCAGTTGTTGGTTTCTGCGGT GCCAGATCCATCGAAATCCATTCATGAAAAGCTCAAAGGCAACAAAGGAGAAATTCCACTTTGGACTCCAGATTCCGTTG GCTGTCCTTTCGCTGGCCGCTGTGAACACGCAACAGAGAAATGTCGTGAGAAGCTGCCTGAAGTGACTCAACTGTCTGAA AACCACTTTGTTCGTTGTTACCTATTCGAAAACTAA
Upstream 100 bases:
>100_bases GAGCCAGGCCGTTTCTCAAACTGCCACCTTTATGGCGAACCGATTGCTCAAAACAAGCTGTAACACAACGAAATAAGCAG TAAGAAGACTGGAGACAATT
Downstream 100 bases:
>100_bases ACCTAATTGAGCCAAGGCGTTGCCTTGGCTCTCACTGTTACTACCTATTATTTTGCGACATGTCGGAGATTTGTAATGCT GCTACTCACCAATCACCTAG
Product: ABC-type oligopeptide transport system, ATPase component
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSKEYGELLIEGKNVVKDFPLNSNALKQTKMRAINDVSFKMYKARGLSVVGESGSGKSTTAKMIAKMYAPTNGVIEYKGR DIQEITSKKDLMTYREGIQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVAPGNKKELEERVYDLLEQVGLIPPKATAEKF PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHEKLKGNKGEIPLWTPDSVGCPFAGRCEHATEKCREKLPEVTQLSE NHFVRCYLFEN
Sequences:
>Translated_331_residues MSKEYGELLIEGKNVVKDFPLNSNALKQTKMRAINDVSFKMYKARGLSVVGESGSGKSTTAKMIAKMYAPTNGVIEYKGR DIQEITSKKDLMTYREGIQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVAPGNKKELEERVYDLLEQVGLIPPKATAEKF PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHEKLKGNKGEIPLWTPDSVGCPFAGRCEHATEKCREKLPEVTQLSE NHFVRCYLFEN >Mature_330_residues SKEYGELLIEGKNVVKDFPLNSNALKQTKMRAINDVSFKMYKARGLSVVGESGSGKSTTAKMIAKMYAPTNGVIEYKGRD IQEITSKKDLMTYREGIQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVAPGNKKELEERVYDLLEQVGLIPPKATAEKFP HQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLAVMYVGH MVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHEKLKGNKGEIPLWTPDSVGCPFAGRCEHATEKCREKLPEVTQLSEN HFVRCYLFEN
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI255708477, Length=314, Percent_Identity=23.8853503184713, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=24.4131455399061, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI42741659, Length=246, Percent_Identity=27.6422764227642, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI105990541, Length=213, Percent_Identity=25.3521126760563, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=22.3744292237443, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI9961252, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI4505771, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI9961250, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=242, Percent_Identity=26.8595041322314, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=219, Percent_Identity=21.9178082191781, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI45446740, Length=219, Percent_Identity=21.9178082191781, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21536378, Length=239, Percent_Identity=25.1046025104602, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI30795238, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27881501, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9955963, Length=167, Percent_Identity=29.3413173652695, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI153792144, Length=232, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=23.3333333333333, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI148612844, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI1789962, Length=320, Percent_Identity=34.6875, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI1787500, Length=299, Percent_Identity=38.4615384615385, Blast_Score=212, Evalue=3e-56, Organism=Escherichia coli, GI1789963, Length=301, Percent_Identity=35.8803986710963, Blast_Score=206, Evalue=3e-54, Organism=Escherichia coli, GI145693107, Length=271, Percent_Identity=40.590405904059, Blast_Score=202, Evalue=2e-53, Organism=Escherichia coli, GI1787758, Length=302, Percent_Identity=34.7682119205298, Blast_Score=188, Evalue=4e-49, Organism=Escherichia coli, GI48994883, Length=301, Percent_Identity=33.2225913621262, Blast_Score=174, Evalue=6e-45, Organism=Escherichia coli, GI1787759, Length=300, Percent_Identity=32.6666666666667, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1788506, Length=252, Percent_Identity=35.3174603174603, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=31.5384615384615, Blast_Score=151, Evalue=4e-38, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=34.7457627118644, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI1787548, Length=328, Percent_Identity=26.5243902439024, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1789032, Length=235, Percent_Identity=31.4893617021277, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=31.2796208530806, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1786398, Length=258, Percent_Identity=29.8449612403101, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789890, Length=243, Percent_Identity=30.4526748971193, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87081791, Length=245, Percent_Identity=31.0204081632653, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=31.9066147859922, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=32.1285140562249, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=28.4552845528455, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI87081834, Length=228, Percent_Identity=29.3859649122807, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=33.175355450237, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=34.9557522123894, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=29.7413793103448, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081709, Length=247, Percent_Identity=27.5303643724696, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=29.8642533936652, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=30.0411522633745, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=28.8702928870293, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787712, Length=257, Percent_Identity=28.0155642023346, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=30.0925925925926, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=29.8076923076923, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=28.8990825688073, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=25.8064516129032, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786698, Length=194, Percent_Identity=28.3505154639175, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082267, Length=257, Percent_Identity=28.4046692607004, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=224, Percent_Identity=28.125, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786703, Length=198, Percent_Identity=28.2828282828283, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=26.7241379310345, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788210, Length=225, Percent_Identity=27.1111111111111, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1789586, Length=232, Percent_Identity=29.3103448275862, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790534, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=25.531914893617, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787792, Length=269, Percent_Identity=25.2788104089219, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786653, Length=237, Percent_Identity=26.5822784810127, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=25.4032258064516, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790190, Length=237, Percent_Identity=23.6286919831224, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790544, Length=230, Percent_Identity=24.3478260869565, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI48994943, Length=251, Percent_Identity=22.3107569721116, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=27.7310924369748, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=28.4090909090909, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=25.3588516746411, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.1845493562232, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17543740, Length=245, Percent_Identity=27.7551020408163, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI212646699, Length=252, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI25146777, Length=257, Percent_Identity=27.6264591439689, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567265, Length=234, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211015, Length=251, Percent_Identity=27.8884462151394, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=251, Percent_Identity=27.8884462151394, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211017, Length=251, Percent_Identity=27.8884462151394, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=237, Percent_Identity=26.1603375527426, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=27.5423728813559, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115535101, Length=227, Percent_Identity=26.8722466960352, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=231, Percent_Identity=26.8398268398268, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=23.6051502145923, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17510237, Length=270, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=277, Percent_Identity=26.7148014440433, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323959, Length=242, Percent_Identity=27.6859504132231, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6321752, Length=251, Percent_Identity=26.6932270916335, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=247, Percent_Identity=25.9109311740891, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=24.2152466367713, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=223, Percent_Identity=25.1121076233184, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=24.2152466367713, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574533, Length=256, Percent_Identity=26.953125, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37260; Mature: 37129
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKEYGELLIEGKNVVKDFPLNSNALKQTKMRAINDVSFKMYKARGLSVVGESGSGKSTT CCCCHHHHEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH AKMIAKMYAPTNGVIEYKGRDIQEITSKKDLMTYREGIQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH RPLLIHKKVAPGNKKELEERVYDLLEQVGLIPPKATAEKFPHQLSGGQRQRVNLARNIAV HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHEKLKGNKGEIPLWTPDSVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCC CEHATEKCREKLPEVTQLSENHFVRCYLFEN CHHHHHHHHHHCCHHHHCCCCCEEEEEEECC >Mature Secondary Structure SKEYGELLIEGKNVVKDFPLNSNALKQTKMRAINDVSFKMYKARGLSVVGESGSGKSTT CCCHHHHEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH AKMIAKMYAPTNGVIEYKGRDIQEITSKKDLMTYREGIQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH RPLLIHKKVAPGNKKELEERVYDLLEQVGLIPPKATAEKFPHQLSGGQRQRVNLARNIAV HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHEKLKGNKGEIPLWTPDSVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCC CEHATEKCREKLPEVTQLSENHFVRCYLFEN CHHHHHHHHHHCCHHHHCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]