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The map label for this gene is yebA [H]

Identifier: 37680908

GI number: 37680908

Start: 2762826

End: 2764118

Strand: Direct

Name: yebA [H]

Synonym: VV2724

Alternate gene names: 37680908

Gene position: 2762826-2764118 (Clockwise)

Preceding gene: 37680906

Following gene: 161486604

Centisome position: 82.36

GC content: 46.87

Gene sequence:

>1293_bases
ATGCTTTCAATTTTTGCCCGTCTTCCCATATTGCACAAAGTGCTGATCGGCTTTTTTAGTGCGATGATTTTTGTCGCTCT
GTTTCTTTTGCCTGATGCTAATGAACTGCGCCCAAAAGAGAACCGTTTAGAAGTAGGACGCCACTACCCTATTGGCATCG
AGATGCAGCGACTGTCAATCAATCCCGTGTTATCTGCCGAATCCTCAGTGCATCGTTGGGAACGCTATCGCGTGAAGGAT
GGGGAAAGCGCCGCTATCTTATTCCAACGCATTGGCTTATCAGCTTCCTTATTACACCAATTGATCACCACCAACGATGA
GATCAAAACTCAACTTTCTCGCCTTAAACCTGGTGACATGCTGCAATTTGGCTTTGATGCACAGGATCAATTAGTCAAAC
TCAAACGCCAGGTGAATGCCTTCGAAACCTTTGAAATTACTCGAAGTGATACTGGCTACCGCTCTCAGCTTAATAATAAG
GAAGTGAACTACCAGTACGCGTATGCCGAAGCGTCCATTACTTCAAACTTTTGGAATGCCGCCATCAGCGCTGGATTGAC
GGCCAACCAAATAATGGAACTCGCCGGGATTTTTGGCTGGGACATCGACTTTGCACAAGATATTCGTGAACGAGACAGCT
TTCGCGTGCTTTACCAAGAACAGGTTGTAGAGGGAGAAGTCATCGGTCGTGGCCGTATTATTGCTGCTATTTTCCGTAAC
CAAGGCGATACCTTCACCGCCATCTATGATGACAAAACAGGCAACTATTACGACGAGAACGGGCGAGCAATGAAGAAAGC
GTTCTTGCGGGCACCTATCGATTTTCGACGTGTAAGCTCTAACTTTAATCCGCGTCGACTGCATCCCGTTACCGGACAAG
TCAAAGCACACCGAGGTACCGATTACGTCGCACCCGTTGGCACACCAATTTGGGCTGCAGGCGATGGTGTCGTACAACAA
GCGGGGTACAACCAATTTAACGGTAACTACGTGTTTATCCGCCACAGCAACACTTATCTGACTAAGTATTTGCATCTACA
AAAGAAATTGGTCAAGACCGGACAACGAGTCAAACAAGGTCAAAGTATTGGTACTTTAGGCGGGACAGGCCGTGTGACAG
GCCCTCACCTGCATTATGAATTTTTGGTCAACGGGGTTCACAAAAACCCCAGAACGGTTAGCTTACCTCAAGCTCAATCG
TTGAGCGGACAAGCAAAAGAGACCTTCATCGCCAATTCTAAACTGCGTCTCGATAAATTAGAGCGCTACAGTAAGTTACT
GGCAATGAACTAA

Upstream 100 bases:

>100_bases
AATATAATAGCTGGACATCTTACTTGAATAGCGATGATTTTTGAAACAAGTTAGACTATTCCGTTGTTAATTTTGTCTTC
ATAAACCGTATAAACCCGAT

Downstream 100 bases:

>100_bases
CCCTGCGTCAGCACACGAAAAGCAAAAAGAGAGGCAAGGTTTGCCTCTCTTTTGCTTAATAGGGTTTGGAGATTACAAGC
CGACGACTTTTCCAGATTCA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MLSIFARLPILHKVLIGFFSAMIFVALFLLPDANELRPKENRLEVGRHYPIGIEMQRLSINPVLSAESSVHRWERYRVKD
GESAAILFQRIGLSASLLHQLITTNDEIKTQLSRLKPGDMLQFGFDAQDQLVKLKRQVNAFETFEITRSDTGYRSQLNNK
EVNYQYAYAEASITSNFWNAAISAGLTANQIMELAGIFGWDIDFAQDIRERDSFRVLYQEQVVEGEVIGRGRIIAAIFRN
QGDTFTAIYDDKTGNYYDENGRAMKKAFLRAPIDFRRVSSNFNPRRLHPVTGQVKAHRGTDYVAPVGTPIWAAGDGVVQQ
AGYNQFNGNYVFIRHSNTYLTKYLHLQKKLVKTGQRVKQGQSIGTLGGTGRVTGPHLHYEFLVNGVHKNPRTVSLPQAQS
LSGQAKETFIANSKLRLDKLERYSKLLAMN

Sequences:

>Translated_430_residues
MLSIFARLPILHKVLIGFFSAMIFVALFLLPDANELRPKENRLEVGRHYPIGIEMQRLSINPVLSAESSVHRWERYRVKD
GESAAILFQRIGLSASLLHQLITTNDEIKTQLSRLKPGDMLQFGFDAQDQLVKLKRQVNAFETFEITRSDTGYRSQLNNK
EVNYQYAYAEASITSNFWNAAISAGLTANQIMELAGIFGWDIDFAQDIRERDSFRVLYQEQVVEGEVIGRGRIIAAIFRN
QGDTFTAIYDDKTGNYYDENGRAMKKAFLRAPIDFRRVSSNFNPRRLHPVTGQVKAHRGTDYVAPVGTPIWAAGDGVVQQ
AGYNQFNGNYVFIRHSNTYLTKYLHLQKKLVKTGQRVKQGQSIGTLGGTGRVTGPHLHYEFLVNGVHKNPRTVSLPQAQS
LSGQAKETFIANSKLRLDKLERYSKLLAMN
>Mature_430_residues
MLSIFARLPILHKVLIGFFSAMIFVALFLLPDANELRPKENRLEVGRHYPIGIEMQRLSINPVLSAESSVHRWERYRVKD
GESAAILFQRIGLSASLLHQLITTNDEIKTQLSRLKPGDMLQFGFDAQDQLVKLKRQVNAFETFEITRSDTGYRSQLNNK
EVNYQYAYAEASITSNFWNAAISAGLTANQIMELAGIFGWDIDFAQDIRERDSFRVLYQEQVVEGEVIGRGRIIAAIFRN
QGDTFTAIYDDKTGNYYDENGRAMKKAFLRAPIDFRRVSSNFNPRRLHPVTGQVKAHRGTDYVAPVGTPIWAAGDGVVQQ
AGYNQFNGNYVFIRHSNTYLTKYLHLQKKLVKTGQRVKQGQSIGTLGGTGRVTGPHLHYEFLVNGVHKNPRTVSLPQAQS
LSGQAKETFIANSKLRLDKLERYSKLLAMN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=439, Percent_Identity=32.3462414578588, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI87082174, Length=123, Percent_Identity=38.2113821138211, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48680; Mature: 48680

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIFARLPILHKVLIGFFSAMIFVALFLLPDANELRPKENRLEVGRHYPIGIEMQRLSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCCCCCEEEEEEEC
NPVLSAESSVHRWERYRVKDGESAAILFQRIGLSASLLHQLITTNDEIKTQLSRLKPGDM
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCE
LQFGFDAQDQLVKLKRQVNAFETFEITRSDTGYRSQLNNKEVNYQYAYAEASITSNFWNA
EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCEEEEEEEHHHHHHHHHH
AISAGLTANQIMELAGIFGWDIDFAQDIRERDSFRVLYQEQVVEGEVIGRGRIIAAIFRN
HHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHEEHHHHHHHCCEEECCCCEEEEEEEC
QGDTFTAIYDDKTGNYYDENGRAMKKAFLRAPIDFRRVSSNFNPRRLHPVTGQVKAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCEEECCCC
DYVAPVGTPIWAAGDGVVQQAGYNQFNGNYVFIRHSNTYLTKYLHLQKKLVKTGQRVKQG
CEECCCCCCEEECCCCHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
QSIGTLGGTGRVTGPHLHYEFLVNGVHKNPRTVSLPQAQSLSGQAKETFIANSKLRLDKL
CCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHH
ERYSKLLAMN
HHHHHHHCCC
>Mature Secondary Structure
MLSIFARLPILHKVLIGFFSAMIFVALFLLPDANELRPKENRLEVGRHYPIGIEMQRLSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCCCCCEEEEEEEC
NPVLSAESSVHRWERYRVKDGESAAILFQRIGLSASLLHQLITTNDEIKTQLSRLKPGDM
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCE
LQFGFDAQDQLVKLKRQVNAFETFEITRSDTGYRSQLNNKEVNYQYAYAEASITSNFWNA
EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCEEEEEEEHHHHHHHHHH
AISAGLTANQIMELAGIFGWDIDFAQDIRERDSFRVLYQEQVVEGEVIGRGRIIAAIFRN
HHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHEEHHHHHHHCCEEECCCCEEEEEEEC
QGDTFTAIYDDKTGNYYDENGRAMKKAFLRAPIDFRRVSSNFNPRRLHPVTGQVKAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCEEECCCC
DYVAPVGTPIWAAGDGVVQQAGYNQFNGNYVFIRHSNTYLTKYLHLQKKLVKTGQRVKQG
CEECCCCCCEEECCCCHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
QSIGTLGGTGRVTGPHLHYEFLVNGVHKNPRTVSLPQAQSLSGQAKETFIANSKLRLDKL
CCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHH
ERYSKLLAMN
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]