Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
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Accession | NC_005139 |
Length | 3,354,505 |
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The map label for this gene is 37680525
Identifier: 37680525
GI number: 37680525
Start: 2366870
End: 2368417
Strand: Direct
Name: 37680525
Synonym: VV2341
Alternate gene names: NA
Gene position: 2366870-2368417 (Clockwise)
Preceding gene: 37680518
Following gene: 37680526
Centisome position: 70.56
GC content: 47.67
Gene sequence:
>1548_bases ATGTCAGACGCAGTGAATAAAGTGCATTCTGATTCAGATATTGAAACGAAGAGCTACAGTGAGCTTCATCGTCCAGCTTC TGAATTTGCCAGCCGCTCAGACTACCTAGACCACGAACTGCAAATTATGAAACCGCGCCGTTTCGGTTTGAACCTTCCTG GTCGTGACTTCCGTTTTGAACTTGAGGACCTTGTTCCTGCGCTTGCTGGTACTATCGGTATTATCGCGATGTACTCTGCA GTAATGATGTCTTGGGCAGACGGTCTAACCCAAGCTTGGGACCACATCAATTTAGGTAAAGAATTTGCTATCGAAGTGGC GCGTGTGGAAATGTTGTTCCCAGCGTTATTCTTCTGTGTTATCGCATCTGGCTTTGTGAACCCACGAGCTAACTTAGCCG GTAACCACGGTCCAATGATCCCTCTTATCGGCGCGATTGCTCTCGCTGGTGCTCACCCTCTTGCATTGGCACTTCTACTT GGCGTGTTTGGTCTCCTACTGAGCTACTTTAAAGGTGGTTCTAAACTGGTGAACCTGACCTCCGAAGGTACCGCAGGTGG CTTGTTGATCTTCCTCGGCTTTACCGGGACGATGAGCCAAATTACCTCCATTCAAGAATGGGCCGTTGGCCTGCAATCTG CTGACGTTGCAGCTGGCAGCCTAGGCTACATTGGTTTGGTTGTGCTTGGCATTAACATCGTTATTTACGCACTGCTTGCT AAACTCAACCTACGTTGGCTAGCAATCCCAGTATGTGCGTTTACTGGCTTGGTGATTGCACTTGCGCTAGGTGCAGGTTT TGATCTTAAGTTCGAAACGGAAATGGGCCTACCTAACCTGAACCCAGTTTACTGGTGGGGCAGCACTGAGACTGGTTGGC AACTTGGCCTACCAACGCTACAACACTTTATCGCTTCTCTACCATTTGCGATTCTAGCGGTAGCAATGTGGTCTCCAGAT TTCCTTGGTCACCGTATTTTCCAAGAATTGAACTATCCTAAGAAGACAGAAAAAGTGCTGATGGATGTCGATGACACCAT GACCATGTGTTCTATTCGTCAAATGGTGGGTACTGCACTTGGTGGCGGTAACATCACATCATCTTGGGGTACATACATGA TCCCAGCTGCGATTGCGAAGCGTCCAATCCCTGGTGGTGCGATCATCCTAGGCTGTTTGGTTATGACGATTGCGATTCTT GGCTTCCCAATGGATGTCGCGGTATGGCCACCAGTAATGCGTTGTGCGCTATTAGTAGGTGTATTCTTGCCTCTACTTGA AGCCGGTATGCAGATGGTTCGTAGCACAAAAGATTCGCAAGCAGCGGGTATCTGTATCTTTGGTTCTGCGGTTGTGAACC CAGTTCTAGCTTGGGCATTGACCATGCTACTAGATAATAATGGTCTGATTGGTGACAAAGAGCGCGCATCTAAACTATCT TTTGTCGATAAAGTAGTGATTCCAGGTGGTGTTCTTATTATCTGTCTAGTTGCTATGCTTGCAGTTGGTATGCTAGAAAG CCAATACGGCATCAAAGCTTGGCTATAA
Upstream 100 bases:
>100_bases AACCCTAACACCTAGCATCGGCTATAACAGGAAAAACCCGCAGGATGCGGATCATAGAATTCAGATCGAATTACTAACTT TTTAAATATATGAGGAATCT
Downstream 100 bases:
>100_bases GCTTTCAAAAAAAGTTTGGGTGGTGCTGGTCACCACCCAAATTTTATTGAGTTTTTTTAGCTTTTATTGATTTAGTTTAA GGTTTGCAAAAAAATTTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: Xanthine/Uracil/Vitamin C Permease; Permease Family Protein
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MSDAVNKVHSDSDIETKSYSELHRPASEFASRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSA VMMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFFCVIASGFVNPRANLAGNHGPMIPLIGAIALAGAHPLALALLL GVFGLLLSYFKGGSKLVNLTSEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSLGYIGLVVLGINIVIYALLA KLNLRWLAIPVCAFTGLVIALALGAGFDLKFETEMGLPNLNPVYWWGSTETGWQLGLPTLQHFIASLPFAILAVAMWSPD FLGHRIFQELNYPKKTEKVLMDVDDTMTMCSIRQMVGTALGGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAIL GFPMDVAVWPPVMRCALLVGVFLPLLEAGMQMVRSTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERASKLS FVDKVVIPGGVLIICLVAMLAVGMLESQYGIKAWL
Sequences:
>Translated_515_residues MSDAVNKVHSDSDIETKSYSELHRPASEFASRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSA VMMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFFCVIASGFVNPRANLAGNHGPMIPLIGAIALAGAHPLALALLL GVFGLLLSYFKGGSKLVNLTSEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSLGYIGLVVLGINIVIYALLA KLNLRWLAIPVCAFTGLVIALALGAGFDLKFETEMGLPNLNPVYWWGSTETGWQLGLPTLQHFIASLPFAILAVAMWSPD FLGHRIFQELNYPKKTEKVLMDVDDTMTMCSIRQMVGTALGGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAIL GFPMDVAVWPPVMRCALLVGVFLPLLEAGMQMVRSTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERASKLS FVDKVVIPGGVLIICLVAMLAVGMLESQYGIKAWL >Mature_514_residues SDAVNKVHSDSDIETKSYSELHRPASEFASRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSAV MMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFFCVIASGFVNPRANLAGNHGPMIPLIGAIALAGAHPLALALLLG VFGLLLSYFKGGSKLVNLTSEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSLGYIGLVVLGINIVIYALLAK LNLRWLAIPVCAFTGLVIALALGAGFDLKFETEMGLPNLNPVYWWGSTETGWQLGLPTLQHFIASLPFAILAVAMWSPDF LGHRIFQELNYPKKTEKVLMDVDDTMTMCSIRQMVGTALGGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAILG FPMDVAVWPPVMRCALLVGVFLPLLEAGMQMVRSTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERASKLSF VDKVVIPGGVLIICLVAMLAVGMLESQYGIKAWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55249; Mature: 55118
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAVNKVHSDSDIETKSYSELHRPASEFASRSDYLDHELQIMKPRRFGLNLPGRDFRFE CCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHEECCHHCCCCCCCCCCEEE LEDLVPALAGTIGIIAMYSAVMMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFFCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IASGFVNPRANLAGNHGPMIPLIGAIALAGAHPLALALLLGVFGLLLSYFKGGSKLVNLT HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC SEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSLGYIGLVVLGINIVIYALLA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHH KLNLRWLAIPVCAFTGLVIALALGAGFDLKFETEMGLPNLNPVYWWGSTETGWQLGLPTL HCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHH QHFIASLPFAILAVAMWSPDFLGHRIFQELNYPKKTEKVLMDVDDTMTMCSIRQMVGTAL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC GGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAILGFPMDVAVWPPVMRCALLVG CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHH VFLPLLEAGMQMVRSTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERASKLS HHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FVDKVVIPGGVLIICLVAMLAVGMLESQYGIKAWL HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SDAVNKVHSDSDIETKSYSELHRPASEFASRSDYLDHELQIMKPRRFGLNLPGRDFRFE CCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHEECCHHCCCCCCCCCCEEE LEDLVPALAGTIGIIAMYSAVMMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFFCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IASGFVNPRANLAGNHGPMIPLIGAIALAGAHPLALALLLGVFGLLLSYFKGGSKLVNLT HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC SEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSLGYIGLVVLGINIVIYALLA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHH KLNLRWLAIPVCAFTGLVIALALGAGFDLKFETEMGLPNLNPVYWWGSTETGWQLGLPTL HCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHH QHFIASLPFAILAVAMWSPDFLGHRIFQELNYPKKTEKVLMDVDDTMTMCSIRQMVGTAL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC GGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAILGFPMDVAVWPPVMRCALLVG CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHH VFLPLLEAGMQMVRSTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERASKLS HHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FVDKVVIPGGVLIICLVAMLAVGMLESQYGIKAWL HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA