Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
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Accession | NC_005139 |
Length | 3,354,505 |
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The map label for this gene is 37680425
Identifier: 37680425
GI number: 37680425
Start: 2263437
End: 2264276
Strand: Direct
Name: 37680425
Synonym: VV2241
Alternate gene names: NA
Gene position: 2263437-2264276 (Clockwise)
Preceding gene: 37680419
Following gene: 37680430
Centisome position: 67.47
GC content: 46.07
Gene sequence:
>840_bases ATGAGTGCATGGCCAATTCGATGGGATCTGCTGTTTCGATACCGAATGATTGAGATTATTGCTTTATGGGAAGGGCGTTT GACCACCAACCATCTGCTCCAGAGCTTTGGTATCGGGCGTCAACAAGCTTCCAAAGACATCAATACTTATCTTGCGGAGA TTGCACCTGGCAACTTGGTTTACGATAAGTACCTCAAAGGCTATAAACCCAGTGATAGCTTCAGCCCTAAACTCACCTCT GGCCATGCCGATGAATACTTGCATATTCTTTCGCGTAGTGAGGATATGACGGTCACTTTTAATGAGCTCGATATGGGCTT TGAACATTCCACTATGGTTCGCCCAGTAACACGCAACATTTCGCCACAAGTATTACGTCCTTTGGTGCAGGCGATACGAG AGAAAAAACGTGTCGATATTTGCTACACATCGCTAAAAGATGGTGAGCAATCTGAGCGCATTATTTCCCCGCATACTCTT GTTTGCACACCATTACGCTGGCACGTTCGCGCTTATTGTGAACAGGCTGGTGGCTATCGTGATTTTGTCTTAAGCCGCAT ACAAGGTATTCACGACATCAACAATAATGCGATACACGGTAAACGTGCCGATGTACTTTGGAATACCAAAGTGAACGTAG AGCTCATCCCCGACCTTCGCCTAAATGAAAAACAACGCGCGGTGATAGAAAAAGATTATGCGATGAGTGACGGCGCTTGC GAATCGCCACCAACGCGTCACTCGTTCGCTATGTGCTTGATACCTAGAACATTGATATCCATGTGCAAAAATCTAATCCT CGAGGACAACAGATTGTGCTGGGGAATCGGGATGAGTTGA
Upstream 100 bases:
>100_bases CTATTGACGTACTTGCACCGTTAAAAATACTATGACGTTATCAACGACAGGTAAATACTGAATACATGAATATGTCGAAT AACTAGACAGGAATCTAACA
Downstream 100 bases:
>100_bases TCCAGTTCATTTCGTAACTGTTCGTATCCTATTGATTTCAAATGTAGCTCTGTATGAATTCGACTCAAGTATTAGGTGCT ATAACGGCACCTAATAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSAWPIRWDLLFRYRMIEIIALWEGRLTTNHLLQSFGIGRQQASKDINTYLAEIAPGNLVYDKYLKGYKPSDSFSPKLTS GHADEYLHILSRSEDMTVTFNELDMGFEHSTMVRPVTRNISPQVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTL VCTPLRWHVRAYCEQAGGYRDFVLSRIQGIHDINNNAIHGKRADVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGAC ESPPTRHSFAMCLIPRTLISMCKNLILEDNRLCWGIGMS
Sequences:
>Translated_279_residues MSAWPIRWDLLFRYRMIEIIALWEGRLTTNHLLQSFGIGRQQASKDINTYLAEIAPGNLVYDKYLKGYKPSDSFSPKLTS GHADEYLHILSRSEDMTVTFNELDMGFEHSTMVRPVTRNISPQVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTL VCTPLRWHVRAYCEQAGGYRDFVLSRIQGIHDINNNAIHGKRADVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGAC ESPPTRHSFAMCLIPRTLISMCKNLILEDNRLCWGIGMS >Mature_278_residues SAWPIRWDLLFRYRMIEIIALWEGRLTTNHLLQSFGIGRQQASKDINTYLAEIAPGNLVYDKYLKGYKPSDSFSPKLTSG HADEYLHILSRSEDMTVTFNELDMGFEHSTMVRPVTRNISPQVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTLV CTPLRWHVRAYCEQAGGYRDFVLSRIQGIHDINNNAIHGKRADVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGACE SPPTRHSFAMCLIPRTLISMCKNLILEDNRLCWGIGMS
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32081; Mature: 31950
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAWPIRWDLLFRYRMIEIIALWEGRLTTNHLLQSFGIGRQQASKDINTYLAEIAPGNLV CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE YDKYLKGYKPSDSFSPKLTSGHADEYLHILSRSEDMTVTFNELDMGFEHSTMVRPVTRNI HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCC SPQVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTLVCTPLRWHVRAYCEQAGGYR CHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCHH DFVLSRIQGIHDINNNAIHGKRADVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGAC HHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCC ESPPTRHSFAMCLIPRTLISMCKNLILEDNRLCWGIGMS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC >Mature Secondary Structure SAWPIRWDLLFRYRMIEIIALWEGRLTTNHLLQSFGIGRQQASKDINTYLAEIAPGNLV CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE YDKYLKGYKPSDSFSPKLTSGHADEYLHILSRSEDMTVTFNELDMGFEHSTMVRPVTRNI HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCC SPQVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTLVCTPLRWHVRAYCEQAGGYR CHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCHH DFVLSRIQGIHDINNNAIHGKRADVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGAC HHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCC ESPPTRHSFAMCLIPRTLISMCKNLILEDNRLCWGIGMS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA