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The map label for this gene is ompC [C]

Identifier: 37680430

GI number: 37680430

Start: 2269491

End: 2270516

Strand: Direct

Name: ompC [C]

Synonym: VV2245

Alternate gene names: 37680430

Gene position: 2269491-2270516 (Clockwise)

Preceding gene: 37680425

Following gene: 37680431

Centisome position: 67.66

GC content: 41.03

Gene sequence:

>1026_bases
ATGAGAATCAACAAACCACTTTTAACTACACTCCCCATCCTATGTTTTACTAGTTTCGCACATGCGCAAACTGTTTATGA
TGATCAAACCAATAAGCTAGACATCTACGGAAGAGTCGAAGGGCAAATCATCAACAACAGTGACGACACATTGGGAAAAC
TGGGAGGACGCCTCGGTTTTGACATGAGTCGAGAGCTTGATGTTATAGAAAACAGTCGCGTGATAGGCAAGTTTGAATGG
CAAGTTAGAACAGAAACTAACGATACTCGTCTCGATGCAGGAGAAGATCTCGAAGCTCGTTATAATTATATTGGCCTGGA
AAATGATAACTGGGGAATGGTGATCTTTGGTCGTACCAAAAACCCACTCTATCAAGTAATGAAAATGACAGACAAATATA
AGAATTACACACCAGGCATCTATAACTTTGGCATTTCCTCCATTGACACGTCGTATAAATACAATCGACAAGATGCAACA
TTACAATATAATGGTGAGTTTGGCATACATGAAATCCAAGCAGCTTATGTATTCGGTAATGGCGAAAATGAAAGACTTGA
TCATGGAGTAATGACCAGCTATCGGATGAATTACAAGGGTGATGGATTTAAAATTTCTCCCGCAATTGCGCTCAGCCAAT
ATCAGCGCGACAACAAGAACACCAGTACAAAGCGCAAGCAGCATGATCAAATTCTGGCAGGCATAGAAGCATCATTCAAT
CAATTCACTTTCTCTCTGACTGGCAATAAAACCAACATTGAACTCGACAATGGTGGTGACGAAAAATATTTCGGGCTGGA
CTCACTGATTGCTTATAAATGGGATCAATTCCAATTGCTGGCTGGCTATAGCTTCCTTGATGAAAAAAATGAAGACATCT
ATGAAAAAGAAGATTGGCGAGTTGAAGGCCAGTGGACACTTGCTCGCCGTACATTCTTATCTTTGACTTTCGACCGCGAA
CTCGCAGCGAAAAATACCAGCAGTGAAGATAAAAGCATCACGTTAGGCCTACGTTACGACTTCTAA

Upstream 100 bases:

>100_bases
CACATCAATATTTACATAGGGAACAATCAATTCCCTTATTTTTTCAAACTCTAGGTGATTAGGATGCCAACGTGCCAATA
ATAAACACGGAAGCATAAAA

Downstream 100 bases:

>100_bases
GGAGCAAATATGCAAATCCGACTCAAAGCGTCACTGATTTCCGCAGCATTGGTTTTTACCCATTTCTCTGCGCAAGCTGA
CACCTTAATCGCCCCCTTAC

Product: putative outer membrane protein

Products: NA

Alternate protein names: Porin Gram-Negative Type; Outer Membrane Protein C

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MRINKPLLTTLPILCFTSFAHAQTVYDDQTNKLDIYGRVEGQIINNSDDTLGKLGGRLGFDMSRELDVIENSRVIGKFEW
QVRTETNDTRLDAGEDLEARYNYIGLENDNWGMVIFGRTKNPLYQVMKMTDKYKNYTPGIYNFGISSIDTSYKYNRQDAT
LQYNGEFGIHEIQAAYVFGNGENERLDHGVMTSYRMNYKGDGFKISPAIALSQYQRDNKNTSTKRKQHDQILAGIEASFN
QFTFSLTGNKTNIELDNGGDEKYFGLDSLIAYKWDQFQLLAGYSFLDEKNEDIYEKEDWRVEGQWTLARRTFLSLTFDRE
LAAKNTSSEDKSITLGLRYDF

Sequences:

>Translated_341_residues
MRINKPLLTTLPILCFTSFAHAQTVYDDQTNKLDIYGRVEGQIINNSDDTLGKLGGRLGFDMSRELDVIENSRVIGKFEW
QVRTETNDTRLDAGEDLEARYNYIGLENDNWGMVIFGRTKNPLYQVMKMTDKYKNYTPGIYNFGISSIDTSYKYNRQDAT
LQYNGEFGIHEIQAAYVFGNGENERLDHGVMTSYRMNYKGDGFKISPAIALSQYQRDNKNTSTKRKQHDQILAGIEASFN
QFTFSLTGNKTNIELDNGGDEKYFGLDSLIAYKWDQFQLLAGYSFLDEKNEDIYEKEDWRVEGQWTLARRTFLSLTFDRE
LAAKNTSSEDKSITLGLRYDF
>Mature_341_residues
MRINKPLLTTLPILCFTSFAHAQTVYDDQTNKLDIYGRVEGQIINNSDDTLGKLGGRLGFDMSRELDVIENSRVIGKFEW
QVRTETNDTRLDAGEDLEARYNYIGLENDNWGMVIFGRTKNPLYQVMKMTDKYKNYTPGIYNFGISSIDTSYKYNRQDAT
LQYNGEFGIHEIQAAYVFGNGENERLDHGVMTSYRMNYKGDGFKISPAIALSQYQRDNKNTSTKRKQHDQILAGIEASFN
QFTFSLTGNKTNIELDNGGDEKYFGLDSLIAYKWDQFQLLAGYSFLDEKNEDIYEKEDWRVEGQWTLARRTFLSLTFDRE
LAAKNTSSEDKSITLGLRYDF

Specific function: Forms Passive Diffusion Pores Which Allow Small Molecular Weight Hydrophilic Materials Across The Outer Membrane. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39335; Mature: 39335

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRINKPLLTTLPILCFTSFAHAQTVYDDQTNKLDIYGRVEGQIINNSDDTLGKLGGRLGF
CCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEEECCCCHHHHHHCCCCCC
DMSRELDVIENSRVIGKFEWQVRTETNDTRLDAGEDLEARYNYIGLENDNWGMVIFGRTK
CCCCCCCEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
NPLYQVMKMTDKYKNYTPGIYNFGISSIDTSYKYNRQDATLQYNGEFGIHEIQAAYVFGN
CHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEECCCCCEEEECCCCCCEEEEEEEEEEC
GENERLDHGVMTSYRMNYKGDGFKISPAIALSQYQRDNKNTSTKRKQHDQILAGIEASFN
CCCCCCCCCCEEEEEECCCCCCEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
QFTFSLTGNKTNIELDNGGDEKYFGLDSLIAYKWDQFQLLAGYSFLDEKNEDIYEKEDWR
EEEEEEECCEEEEEECCCCCCCEECCHHHEEECCCCEEEEECCHHHCCCCCCCCCCCCCE
VEGQWTLARRTFLSLTFDRELAAKNTSSEDKSITLGLRYDF
EECEEEEEEEEEEEEEECHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRINKPLLTTLPILCFTSFAHAQTVYDDQTNKLDIYGRVEGQIINNSDDTLGKLGGRLGF
CCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEEECCCCHHHHHHCCCCCC
DMSRELDVIENSRVIGKFEWQVRTETNDTRLDAGEDLEARYNYIGLENDNWGMVIFGRTK
CCCCCCCEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
NPLYQVMKMTDKYKNYTPGIYNFGISSIDTSYKYNRQDATLQYNGEFGIHEIQAAYVFGN
CHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEECCCCCEEEECCCCCCEEEEEEEEEEC
GENERLDHGVMTSYRMNYKGDGFKISPAIALSQYQRDNKNTSTKRKQHDQILAGIEASFN
CCCCCCCCCCEEEEEECCCCCCEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
QFTFSLTGNKTNIELDNGGDEKYFGLDSLIAYKWDQFQLLAGYSFLDEKNEDIYEKEDWR
EEEEEEECCEEEEEECCCCCCCEECCHHHEEECCCCEEEEECCHHHCCCCCCCCCCCCCE
VEGQWTLARRTFLSLTFDRELAAKNTSSEDKSITLGLRYDF
EECEEEEEEEEEEEEEECHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA