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The map label for this gene is ydeP [C]

Identifier: 37521451

GI number: 37521451

Start: 1999627

End: 2001879

Strand: Reverse

Name: ydeP [C]

Synonym: gll1882

Alternate gene names: 37521451

Gene position: 2001879-1999627 (Counterclockwise)

Preceding gene: 37521453

Following gene: 37521450

Centisome position: 42.97

GC content: 63.47

Gene sequence:

>2253_bases
ATGGCCAGAGTGTTGAAGCCTTACCCTGCTTCCGGGTCCGCCGTCTTCAAAATCAGCCGAGGAGGCGGGCTGCCGGTACT
GCTCTACTGGGCAGAAAAAACCCTGGCCCACCGCACGCTGCTCTGGCAAAAACTCAACCACAAAAGCGCCTGCAAATCCT
GCGCCTGGGGAACCGGCGGCCAGAAGGGCGGATTTTTCAACGAAAAGCGCGAACCCCTCCAACGCTGCGCCAAAAGCGTC
GAATCGATCGCCGCCGATCTACAAGGACCGGTGGGTCGAGACTGCTTCGCCCGCATGGATCTTGCTCGCCTGCAGGAACT
CTCATCGATGGAAGCCGACAAACTGGGTCGCTTGAGCCACCCGGTGATTCGGCGCGCGAACAGCAATTACTACGAACCAA
TCGGCTGGGAAGAGGTTTTCGCCATCGCCGCCCGGGCGTTTTCAGGCCCACCCGAGCGCGTCGCCTCCTACTCCTCGGGC
CGCTCCTCCAACGAAGCGGCCTACATCCTCCAATTGATGTTGCGGGCTTACGGCTCCAACAATCTGGCGGACTGCTCGGA
TCTGTGCCATTCGCCCAGCACCGTCGGCCTCAAAGCAGTCTTCGGCTCCGGCACCTCGATGGTGAGCCTCGACGACCTGC
GCCAGTCCGACTGTGTCGTGCTGCTGGGCTCCAACGCCCCCGCCAACCACCCGCGCCTGATGAACGAACTGATCCAGGTG
CGCGAGCGCGGCGGCGCGGTGATCGTCGTCAACCCGGTACTCGAAGTCGGCCTTATCAACTTCGCCACCCCCGCCTCGCT
CAAATCGCTGGCTTTCGGCTCCGAGATCGCTTCACTTTACCTGCAGCCCGACCCGGGAAGCGACGTCGCCCTTTTGATTG
GTCTGGCCAAATCTCTCATAGAAAGCAACCGGCTTGAGCGCGCCTTTCTTGAAGCCCACACCGAGGACTGGCAGGCCGTA
ATCGCCCACATCCAGGCCACCCCCTGGGAGCGCATCGAGCACACCTGCGGCATCGAGCGCGCCGCCATCGAAGGCGCAGC
GGCGGTGATCGGCCGCGCCGAGCGCACCGTCTTTGCCTGGGCGATGGGGATCACCCAGCACGCCAACGGCGTCGACAATG
TCTACGCCATCGCCAACCTGGCTTTGCTCACCGGCAACGCCGGCAAACCGGGCGCAGGCACGATGCCCATCCGCGGCCAC
TCCAACGTGCAGGGCTTCGGCTCGATGGGGGTGAGCGCCCGGCCCAAAGAAGCGATCCAAAAAGCCCTCGAAACACTCCT
GCGAAAACCCCTCAGCCGTGCCCCCGGCTACGACACCCGTGCCCTCATCCAGGCTGCCGAATCCGGCAAGATCGATGCGC
TGTTGTGCCTGGGGGGCAACCTCTGGGGAGCCAATCCCGACCGCGCCCAGACTGCACACGCCCTCGGCCGCATCAAAACG
ATCATCTATCTATCCACCAAGCCCAACCCTGGCCACTTCCACGGCCTCGCCGCCAAAGACACCATCATCATCCCCGTCTT
CACCCGCGATGAGAATCCCCACAAGACCACCACCGAGTCGGGCAACAACTTCGTGCGCCTCAACAGCGAAGGCCAAACCC
ATCTGCACGACGCCGACCTCATCTCGGAAGTCGAATTTCTGACGCGCCTTGCCCACCGGATGCACGGCGAGACACCGCTC
GACTGGCGGCGGCTCACCGACACCGCCTACGTGCGCGGGCTCATCGCCCAAACGATCCCCGGCTACGAAAAAATCGGCGA
GATCGACCGCACCGGCGAGGAATTTACGATAGCGGGCCGCATCTTCCACGAGCCCCGATTTGCAACGCCCACCGGCAAAG
CGAAGATGTTCGTCACCCCCCTGCCGGTGCTCGATAAGCCCAGGGCCGAAGATTTTGGCGTCACAACCTCCAAACGCGCC
ATCGCCCTGGTGCTGGTCACAGTGCGCTCCTACTCCCAGCACAACACCGTCGTCTACAAAGCGGGCGACACCTACCGGGG
GATGCCGCACCGCAACTGCATCCTGATGCACCCCGAGGACGCCGCCGCCGCCGGATTCGCCGAGCACGAGCGGGTAACGG
TCACCGGCAAAGTCGGCCAAAAAGAGCAGGTCGAAATTATCTTCGGCGCCCCCAAGCGCGGCGCCGCCCTGATGTTCTAT
CCCGAAATCAACGACATCATCCGCCCCCCCGTGGACCTGCGCTGCGGCATCCCGGCATTCAAGCGCAACCCGGTGCTCAT
CCACGCCGATTGA

Upstream 100 bases:

>100_bases
ATAGACCGGCGTTGCCCGGAGCGGATTGGCCCCATCGTAGCACCAGCGTTTTTGTGCGCTCGGCTACCCTGGAAGCTGGA
ACTTATCGAGCCCGAGCGCC

Downstream 100 bases:

>100_bases
CCAAGGTGCGCATCGGAACAACGCCTTGAGACCCATATCCCCTACGATGGCCTTGCACTGACCGCAGGGGAACCGGCGAT
GCTCATCCACCTGATTGCCG

Product: formate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 749

Protein sequence:

>750_residues
MARVLKPYPASGSAVFKISRGGGLPVLLYWAEKTLAHRTLLWQKLNHKSACKSCAWGTGGQKGGFFNEKREPLQRCAKSV
ESIAADLQGPVGRDCFARMDLARLQELSSMEADKLGRLSHPVIRRANSNYYEPIGWEEVFAIAARAFSGPPERVASYSSG
RSSNEAAYILQLMLRAYGSNNLADCSDLCHSPSTVGLKAVFGSGTSMVSLDDLRQSDCVVLLGSNAPANHPRLMNELIQV
RERGGAVIVVNPVLEVGLINFATPASLKSLAFGSEIASLYLQPDPGSDVALLIGLAKSLIESNRLERAFLEAHTEDWQAV
IAHIQATPWERIEHTCGIERAAIEGAAAVIGRAERTVFAWAMGITQHANGVDNVYAIANLALLTGNAGKPGAGTMPIRGH
SNVQGFGSMGVSARPKEAIQKALETLLRKPLSRAPGYDTRALIQAAESGKIDALLCLGGNLWGANPDRAQTAHALGRIKT
IIYLSTKPNPGHFHGLAAKDTIIIPVFTRDENPHKTTTESGNNFVRLNSEGQTHLHDADLISEVEFLTRLAHRMHGETPL
DWRRLTDTAYVRGLIAQTIPGYEKIGEIDRTGEEFTIAGRIFHEPRFATPTGKAKMFVTPLPVLDKPRAEDFGVTTSKRA
IALVLVTVRSYSQHNTVVYKAGDTYRGMPHRNCILMHPEDAAAAGFAEHERVTVTGKVGQKEQVEIIFGAPKRGAALMFY
PEINDIIRPPVDLRCGIPAFKRNPVLIHAD

Sequences:

>Translated_750_residues
MARVLKPYPASGSAVFKISRGGGLPVLLYWAEKTLAHRTLLWQKLNHKSACKSCAWGTGGQKGGFFNEKREPLQRCAKSV
ESIAADLQGPVGRDCFARMDLARLQELSSMEADKLGRLSHPVIRRANSNYYEPIGWEEVFAIAARAFSGPPERVASYSSG
RSSNEAAYILQLMLRAYGSNNLADCSDLCHSPSTVGLKAVFGSGTSMVSLDDLRQSDCVVLLGSNAPANHPRLMNELIQV
RERGGAVIVVNPVLEVGLINFATPASLKSLAFGSEIASLYLQPDPGSDVALLIGLAKSLIESNRLERAFLEAHTEDWQAV
IAHIQATPWERIEHTCGIERAAIEGAAAVIGRAERTVFAWAMGITQHANGVDNVYAIANLALLTGNAGKPGAGTMPIRGH
SNVQGFGSMGVSARPKEAIQKALETLLRKPLSRAPGYDTRALIQAAESGKIDALLCLGGNLWGANPDRAQTAHALGRIKT
IIYLSTKPNPGHFHGLAAKDTIIIPVFTRDENPHKTTTESGNNFVRLNSEGQTHLHDADLISEVEFLTRLAHRMHGETPL
DWRRLTDTAYVRGLIAQTIPGYEKIGEIDRTGEEFTIAGRIFHEPRFATPTGKAKMFVTPLPVLDKPRAEDFGVTTSKRA
IALVLVTVRSYSQHNTVVYKAGDTYRGMPHRNCILMHPEDAAAAGFAEHERVTVTGKVGQKEQVEIIFGAPKRGAALMFY
PEINDIIRPPVDLRCGIPAFKRNPVLIHAD
>Mature_749_residues
ARVLKPYPASGSAVFKISRGGGLPVLLYWAEKTLAHRTLLWQKLNHKSACKSCAWGTGGQKGGFFNEKREPLQRCAKSVE
SIAADLQGPVGRDCFARMDLARLQELSSMEADKLGRLSHPVIRRANSNYYEPIGWEEVFAIAARAFSGPPERVASYSSGR
SSNEAAYILQLMLRAYGSNNLADCSDLCHSPSTVGLKAVFGSGTSMVSLDDLRQSDCVVLLGSNAPANHPRLMNELIQVR
ERGGAVIVVNPVLEVGLINFATPASLKSLAFGSEIASLYLQPDPGSDVALLIGLAKSLIESNRLERAFLEAHTEDWQAVI
AHIQATPWERIEHTCGIERAAIEGAAAVIGRAERTVFAWAMGITQHANGVDNVYAIANLALLTGNAGKPGAGTMPIRGHS
NVQGFGSMGVSARPKEAIQKALETLLRKPLSRAPGYDTRALIQAAESGKIDALLCLGGNLWGANPDRAQTAHALGRIKTI
IYLSTKPNPGHFHGLAAKDTIIIPVFTRDENPHKTTTESGNNFVRLNSEGQTHLHDADLISEVEFLTRLAHRMHGETPLD
WRRLTDTAYVRGLIAQTIPGYEKIGEIDRTGEEFTIAGRIFHEPRFATPTGKAKMFVTPLPVLDKPRAEDFGVTTSKRAI
ALVLVTVRSYSQHNTVVYKAGDTYRGMPHRNCILMHPEDAAAAGFAEHERVTVTGKVGQKEQVEIIFGAPKRGAALMFYP
EINDIIRPPVDLRCGIPAFKRNPVLIHAD

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=725, Percent_Identity=32, Blast_Score=327, Evalue=2e-90,
Organism=Escherichia coli, GI3868721, Length=645, Percent_Identity=25.5813953488372, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI3868720, Length=493, Percent_Identity=22.7180527383367, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI3868719, Length=410, Percent_Identity=22.9268292682927, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788534, Length=337, Percent_Identity=23.7388724035608, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081994, Length=704, Percent_Identity=20.4545454545455, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 81519; Mature: 81388

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVLKPYPASGSAVFKISRGGGLPVLLYWAEKTLAHRTLLWQKLNHKSACKSCAWGTGG
CCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCHHHHHHHCCCCCCC
QKGGFFNEKREPLQRCAKSVESIAADLQGPVGRDCFARMDLARLQELSSMEADKLGRLSH
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCC
PVIRRANSNYYEPIGWEEVFAIAARAFSGPPERVASYSSGRSSNEAAYILQLMLRAYGSN
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
NLADCSDLCHSPSTVGLKAVFGSGTSMVSLDDLRQSDCVVLLGSNAPANHPRLMNELIQV
CCCCHHHHHCCCCCCEEEEEECCCCCEEEHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RERGGAVIVVNPVLEVGLINFATPASLKSLAFGSEIASLYLQPDPGSDVALLIGLAKSLI
HHCCCEEEEECCHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
ESNRLERAFLEAHTEDWQAVIAHIQATPWERIEHTCGIERAAIEGAAAVIGRAERTVFAW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHEEEEH
AMGITQHANGVDNVYAIANLALLTGNAGKPGAGTMPIRGHSNVQGFGSMGVSARPKEAIQ
HHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KALETLLRKPLSRAPGYDTRALIQAAESGKIDALLCLGGNLWGANPDRAQTAHALGRIKT
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCEEE
IIYLSTKPNPGHFHGLAAKDTIIIPVFTRDENPHKTTTESGNNFVRLNSEGQTHLHDADL
EEEEECCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
ISEVEFLTRLAHRMHGETPLDWRRLTDTAYVRGLIAQTIPGYEKIGEIDRTGEEFTIAGR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEE
IFHEPRFATPTGKAKMFVTPLPVLDKPRAEDFGVTTSKRAIALVLVTVRSYSQHNTVVYK
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEE
AGDTYRGMPHRNCILMHPEDAAAAGFAEHERVTVTGKVGQKEQVEIIFGAPKRGAALMFY
CCCCCCCCCCCCEEEECCCCHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE
PEINDIIRPPVDLRCGIPAFKRNPVLIHAD
CCHHHHHCCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
ARVLKPYPASGSAVFKISRGGGLPVLLYWAEKTLAHRTLLWQKLNHKSACKSCAWGTGG
CCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCHHHHHHHCCCCCCC
QKGGFFNEKREPLQRCAKSVESIAADLQGPVGRDCFARMDLARLQELSSMEADKLGRLSH
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCC
PVIRRANSNYYEPIGWEEVFAIAARAFSGPPERVASYSSGRSSNEAAYILQLMLRAYGSN
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
NLADCSDLCHSPSTVGLKAVFGSGTSMVSLDDLRQSDCVVLLGSNAPANHPRLMNELIQV
CCCCHHHHHCCCCCCEEEEEECCCCCEEEHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RERGGAVIVVNPVLEVGLINFATPASLKSLAFGSEIASLYLQPDPGSDVALLIGLAKSLI
HHCCCEEEEECCHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
ESNRLERAFLEAHTEDWQAVIAHIQATPWERIEHTCGIERAAIEGAAAVIGRAERTVFAW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHEEEEH
AMGITQHANGVDNVYAIANLALLTGNAGKPGAGTMPIRGHSNVQGFGSMGVSARPKEAIQ
HHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KALETLLRKPLSRAPGYDTRALIQAAESGKIDALLCLGGNLWGANPDRAQTAHALGRIKT
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCEEE
IIYLSTKPNPGHFHGLAAKDTIIIPVFTRDENPHKTTTESGNNFVRLNSEGQTHLHDADL
EEEEECCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
ISEVEFLTRLAHRMHGETPLDWRRLTDTAYVRGLIAQTIPGYEKIGEIDRTGEEFTIAGR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEE
IFHEPRFATPTGKAKMFVTPLPVLDKPRAEDFGVTTSKRAIALVLVTVRSYSQHNTVVYK
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEE
AGDTYRGMPHRNCILMHPEDAAAAGFAEHERVTVTGKVGQKEQVEIIFGAPKRGAALMFY
CCCCCCCCCCCCEEEECCCCHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE
PEINDIIRPPVDLRCGIPAFKRNPVLIHAD
CCHHHHHCCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]