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The map label for this gene is glxA [H]

Identifier: 37521395

GI number: 37521395

Start: 1943940

End: 1944950

Strand: Reverse

Name: glxA [H]

Synonym: gll1826

Alternate gene names: 37521395

Gene position: 1944950-1943940 (Counterclockwise)

Preceding gene: 37521398

Following gene: 37521394

Centisome position: 41.75

GC content: 56.28

Gene sequence:

>1011_bases
ATGACATATATCCCAGAATTTCCGCCACTTCCCCTTCACCAGGAACGATGTGTTCTCTTCGTAGCGTTTCCTGACATGAG
TTTGCTTGACCTGACAGTAGCGCAAACGGTGTTCTGGGCGGCATCAAGATACATGGAACAACGTGGATTACCAGGATACA
GTCGCCATACTATCAGTTTGAATGGCGGGCTGGTGCACAGTGCTGAAGGCGTGGCATTGGCAACGTTGGTACTGGTCGAG
TTCGCAGACGTTGCGGTCGATACCGTCATTGTCCCCGGCTCCCCCGATATCGAGCAGGTATTGGACAACTCCATGCAACT
GGTGGAATGGCTGCACCAGATATCCGGCAAAGCGCGCCGTATTGCATCCGTATGCAGCGGTGCCTTCCTGCTGGCGCAGG
CAGGGCTACTCGACGGCAAGCGTGCCGCCACGCACTGGGCGATGTGCGATCTGCTGAAAAAACATTTTCCCTCGATTGAG
ATCGAACGCGATGCGATCTTTGTTCAGGAAGATTCGGTCTGGACCTCAGCCGGCGTCAGCGCCGGAATCGATCTCGCACT
GGCCCTCGTAGAGGCCGACTGCGGACGTGACATCGCCATGAAGGTTGCACGGGAGCTGGTCGTCTTTTTGAAGCGGCCTG
GCGGACAGTCCCAATTCAGCGAACTACTGCAATCGCAAGTACAGGGCAGCGCAGCCTTCGACGGCTTGCATCTCTGGCTC
GCCGACCATATCGGCAACGAGAATTTAACGGTAGACCTTTTGGCCGAAAGAGTCGGTATGAGCCCGCGCAATTTCGCGCG
CGTCTACAAACAAAGAACTGGCCGGACACCGGCAAAGGCAGTCGAAATTTTTCGGCTGGAAGCGGCGCGACGGTTGTTGG
AGGATTCAGAGCGCAATGCCGATCAGATCGGCCGCCAGTGCGGCTTTGGCGACGAGGAGAGAATGCGGGTCACTTTTCAG
CGCCATCTTGCAATATCGCCGACAGATTATCGCAGGCGATTCTCCAGGTGA

Upstream 100 bases:

>100_bases
CATCGCAAATCGCGGGCTATTGATGTCTAGATATATCTGTGTATCGCTGCGTCGTTTCCACTTGACATCTTGATATTAGC
CATAAAAGCATTTAGCGTAA

Downstream 100 bases:

>100_bases
AAACATGGTCGAAACGGATGTTCGATCTCAATGCCTTGGGACTCGAGGTTTGAGTAGCAGGCGAACAGAAAACCGGGTTA
AGCAGTGGGTACCAGTTTGT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTYIPEFPPLPLHQERCVLFVAFPDMSLLDLTVAQTVFWAASRYMEQRGLPGYSRHTISLNGGLVHSAEGVALATLVLVE
FADVAVDTVIVPGSPDIEQVLDNSMQLVEWLHQISGKARRIASVCSGAFLLAQAGLLDGKRAATHWAMCDLLKKHFPSIE
IERDAIFVQEDSVWTSAGVSAGIDLALALVEADCGRDIAMKVARELVVFLKRPGGQSQFSELLQSQVQGSAAFDGLHLWL
ADHIGNENLTVDLLAERVGMSPRNFARVYKQRTGRTPAKAVEIFRLEAARRLLEDSERNADQIGRQCGFGDEERMRVTFQ
RHLAISPTDYRRRFSR

Sequences:

>Translated_336_residues
MTYIPEFPPLPLHQERCVLFVAFPDMSLLDLTVAQTVFWAASRYMEQRGLPGYSRHTISLNGGLVHSAEGVALATLVLVE
FADVAVDTVIVPGSPDIEQVLDNSMQLVEWLHQISGKARRIASVCSGAFLLAQAGLLDGKRAATHWAMCDLLKKHFPSIE
IERDAIFVQEDSVWTSAGVSAGIDLALALVEADCGRDIAMKVARELVVFLKRPGGQSQFSELLQSQVQGSAAFDGLHLWL
ADHIGNENLTVDLLAERVGMSPRNFARVYKQRTGRTPAKAVEIFRLEAARRLLEDSERNADQIGRQCGFGDEERMRVTFQ
RHLAISPTDYRRRFSR
>Mature_335_residues
TYIPEFPPLPLHQERCVLFVAFPDMSLLDLTVAQTVFWAASRYMEQRGLPGYSRHTISLNGGLVHSAEGVALATLVLVEF
ADVAVDTVIVPGSPDIEQVLDNSMQLVEWLHQISGKARRIASVCSGAFLLAQAGLLDGKRAATHWAMCDLLKKHFPSIEI
ERDAIFVQEDSVWTSAGVSAGIDLALALVEADCGRDIAMKVARELVVFLKRPGGQSQFSELLQSQVQGSAAFDGLHLWLA
DHIGNENLTVDLLAERVGMSPRNFARVYKQRTGRTPAKAVEIFRLEAARRLLEDSERNADQIGRQCGFGDEERMRVTFQR
HLAISPTDYRRRFSR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=149, Percent_Identity=31.5436241610738, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37331; Mature: 37200

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYIPEFPPLPLHQERCVLFVAFPDMSLLDLTVAQTVFWAASRYMEQRGLPGYSRHTISL
CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
NGGLVHSAEGVALATLVLVEFADVAVDTVIVPGSPDIEQVLDNSMQLVEWLHQISGKARR
CCCEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHH
IASVCSGAFLLAQAGLLDGKRAATHWAMCDLLKKHFPSIEIERDAIFVQEDSVWTSAGVS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCHHCCCH
AGIDLALALVEADCGRDIAMKVARELVVFLKRPGGQSQFSELLQSQVQGSAAFDGLHLWL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
ADHIGNENLTVDLLAERVGMSPRNFARVYKQRTGRTPAKAVEIFRLEAARRLLEDSERNA
HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
DQIGRQCGFGDEERMRVTFQRHLAISPTDYRRRFSR
HHHHHHCCCCCHHHHHHEEHHHEECCCHHHHHHCCC
>Mature Secondary Structure 
TYIPEFPPLPLHQERCVLFVAFPDMSLLDLTVAQTVFWAASRYMEQRGLPGYSRHTISL
CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
NGGLVHSAEGVALATLVLVEFADVAVDTVIVPGSPDIEQVLDNSMQLVEWLHQISGKARR
CCCEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHH
IASVCSGAFLLAQAGLLDGKRAATHWAMCDLLKKHFPSIEIERDAIFVQEDSVWTSAGVS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCHHCCCH
AGIDLALALVEADCGRDIAMKVARELVVFLKRPGGQSQFSELLQSQVQGSAAFDGLHLWL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
ADHIGNENLTVDLLAERVGMSPRNFARVYKQRTGRTPAKAVEIFRLEAARRLLEDSERNA
HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
DQIGRQCGFGDEERMRVTFQRHLAISPTDYRRRFSR
HHHHHHCCCCCHHHHHHEEHHHEECCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]