Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
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Accession | NC_005085 |
Length | 4,751,080 |
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The map label for this gene is 34498164
Identifier: 34498164
GI number: 34498164
Start: 2932545
End: 2933828
Strand: Reverse
Name: 34498164
Synonym: CV_2709
Alternate gene names: NA
Gene position: 2933828-2932545 (Counterclockwise)
Preceding gene: 34498165
Following gene: 34498161
Centisome position: 61.75
GC content: 73.21
Gene sequence:
>1284_bases GTGACGCCGGGCTGGCCGTCCTACGACCGGGCGCCGCCGCTCAGCCTGCCCCTGGCTTTCCTGCTGGCGTCGCCATGCTG GCTGTTCATCGCCGGGCTGTGCCTGGCGCAGGCGGGGCCGGGGCCGCTGGACCGCTTCGATCCCGTGGCGCTGGCCGCCG CGCATCTGCTGGCGTTGGGCGTGCTCGGCAACGCGATGTGCGGCGCCGCCTTGCAGATTCTGGCGGTGGTGGCCGGCGTC GCCTTTTCCCGTCCCCGCCTGTTGCTGCACCTGTTGTTCTGGCCGTTGCAGCTGGGCTGCGGCTTGCTGGCCGCGGCTTT TCTCTATGGTTTCCTGCCTATGCTGTTGCTGCCGGCCGCGGCGCTGCTTGCCTGGTCGCTGCTGATGTTCGCCGGTTTCG GCCTGCATGGCGTCGCGAAGAGCCCGGCGCGCGACGCGACTACCCGCGGCATGGCGTCGGCCCTGGCCGCGCTGGCGGCG GCGGCCGCGCTCGGCGTCTCGCTGGCGGGCAGCTTGGGCGCCGGCTGGCCGCTGCCGTGGAAAACCTTGCTGGACTGGCA TGTCTTGTGGGCGCTGGGCGGATGGCTGCTGGGCCTGATCATGGCGGTGGCAGCCACGGTGGTGCCGATGTTCCAGATCA CGCCGGCCTATCCGGCCTGCTGGATGCGCCGGGCGGCTGCGCTGTGGCCGTCGGCGTTATTGGTCTCGGGCCTGGGATGG CAGCTGACGGGAAGCTGGCTGGCCTGGGGGCCGGCCGTGGCCGCGGCGCTGGCGTTCGCCGCGATGACCTGGCGCTTGCA GCTGCGCAGCCGGCGTCCCGGCGATTGCGGGCGGCGTTTCTGGCAGATGGCGATGGCGGCGCTGACGCTGGGATTGTTTG CCGCCTGGGTGGCGGAGAGACAGTCCTGGGCGGGCTGGGCCGTGCTGAGCGGCTGGCTGCTGCTGTTCGGGCTGGGCGTT TGCGCGGTGCTGGGCATGCTTTACAAAATATTGCCCTTCCTGCTGTGGCTGGATCTGCAGCGCCGGGCGCCGCCCGGCGC GCGGGCGCCGGCCACGCTGGCCCTGCTGCCGGAGGCCGCGCAACGACGCTGCCTGTGCGCGTGCGCCGCATGCCTGGCGC TGGGCTGCGCCATGGCGCCAGGGGGCTTGCCGGCACTCGCGGCTGGCGCCGCGGTATGCGCGCTGGCGGTGCTGGCGGCG GCGGACGCGGCCGGGGCGGTATGGCGCTACCGCGCCTGCATCCGCGGATGGCGCGTTGCTCAGGCGGGCGGCGTCATGCC GTAG
Upstream 100 bases:
>100_bases TTCCGACTCCGCTGCTGCCCTTGCTGGACCGCATGGCCGGCGTGGCCTACCGCTTCGAGCTGTCCGGCGACGGCGGGGTG CTGCTGATCCTGGAGCGGAC
Downstream 100 bases:
>100_bases TCGGCCAGCGCGGCGGGGTCGAGCAGGGCGATGTCGCGGCCGTCCACTTCGACCAGGCCGGCCTTGCTCAGCTGCTGCAG CACGCGGGAGAAGGTTTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MTPGWPSYDRAPPLSLPLAFLLASPCWLFIAGLCLAQAGPGPLDRFDPVALAAAHLLALGVLGNAMCGAALQILAVVAGV AFSRPRLLLHLLFWPLQLGCGLLAAAFLYGFLPMLLLPAAALLAWSLLMFAGFGLHGVAKSPARDATTRGMASALAALAA AAALGVSLAGSLGAGWPLPWKTLLDWHVLWALGGWLLGLIMAVAATVVPMFQITPAYPACWMRRAAALWPSALLVSGLGW QLTGSWLAWGPAVAAALAFAAMTWRLQLRSRRPGDCGRRFWQMAMAALTLGLFAAWVAERQSWAGWAVLSGWLLLFGLGV CAVLGMLYKILPFLLWLDLQRRAPPGARAPATLALLPEAAQRRCLCACAACLALGCAMAPGGLPALAAGAAVCALAVLAA ADAAGAVWRYRACIRGWRVAQAGGVMP
Sequences:
>Translated_427_residues MTPGWPSYDRAPPLSLPLAFLLASPCWLFIAGLCLAQAGPGPLDRFDPVALAAAHLLALGVLGNAMCGAALQILAVVAGV AFSRPRLLLHLLFWPLQLGCGLLAAAFLYGFLPMLLLPAAALLAWSLLMFAGFGLHGVAKSPARDATTRGMASALAALAA AAALGVSLAGSLGAGWPLPWKTLLDWHVLWALGGWLLGLIMAVAATVVPMFQITPAYPACWMRRAAALWPSALLVSGLGW QLTGSWLAWGPAVAAALAFAAMTWRLQLRSRRPGDCGRRFWQMAMAALTLGLFAAWVAERQSWAGWAVLSGWLLLFGLGV CAVLGMLYKILPFLLWLDLQRRAPPGARAPATLALLPEAAQRRCLCACAACLALGCAMAPGGLPALAAGAAVCALAVLAA ADAAGAVWRYRACIRGWRVAQAGGVMP >Mature_426_residues TPGWPSYDRAPPLSLPLAFLLASPCWLFIAGLCLAQAGPGPLDRFDPVALAAAHLLALGVLGNAMCGAALQILAVVAGVA FSRPRLLLHLLFWPLQLGCGLLAAAFLYGFLPMLLLPAAALLAWSLLMFAGFGLHGVAKSPARDATTRGMASALAALAAA AALGVSLAGSLGAGWPLPWKTLLDWHVLWALGGWLLGLIMAVAATVVPMFQITPAYPACWMRRAAALWPSALLVSGLGWQ LTGSWLAWGPAVAAALAFAAMTWRLQLRSRRPGDCGRRFWQMAMAALTLGLFAAWVAERQSWAGWAVLSGWLLLFGLGVC AVLGMLYKILPFLLWLDLQRRAPPGARAPATLALLPEAAQRRCLCACAACLALGCAMAPGGLPALAAGAAVCALAVLAAA DAAGAVWRYRACIRGWRVAQAGGVMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44565; Mature: 44434
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPGWPSYDRAPPLSLPLAFLLASPCWLFIAGLCLAQAGPGPLDRFDPVALAAAHLLALG CCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH VLGNAMCGAALQILAVVAGVAFSRPRLLLHLLFWPLQLGCGLLAAAFLYGFLPMLLLPAA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLAWSLLMFAGFGLHGVAKSPARDATTRGMASALAALAAAAALGVSLAGSLGAGWPLPW HHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH KTLLDWHVLWALGGWLLGLIMAVAATVVPMFQITPAYPACWMRRAAALWPSALLVSGLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC QLTGSWLAWGPAVAAALAFAAMTWRLQLRSRRPGDCGRRFWQMAMAALTLGLFAAWVAER CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QSWAGWAVLSGWLLLFGLGVCAVLGMLYKILPFLLWLDLQRRAPPGARAPATLALLPEAA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH QRRCLCACAACLALGCAMAPGGLPALAAGAAVCALAVLAAADAAGAVWRYRACIRGWRVA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAGGVMP CCCCCCC >Mature Secondary Structure TPGWPSYDRAPPLSLPLAFLLASPCWLFIAGLCLAQAGPGPLDRFDPVALAAAHLLALG CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH VLGNAMCGAALQILAVVAGVAFSRPRLLLHLLFWPLQLGCGLLAAAFLYGFLPMLLLPAA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLAWSLLMFAGFGLHGVAKSPARDATTRGMASALAALAAAAALGVSLAGSLGAGWPLPW HHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH KTLLDWHVLWALGGWLLGLIMAVAATVVPMFQITPAYPACWMRRAAALWPSALLVSGLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC QLTGSWLAWGPAVAAALAFAAMTWRLQLRSRRPGDCGRRFWQMAMAALTLGLFAAWVAER CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QSWAGWAVLSGWLLLFGLGVCAVLGMLYKILPFLLWLDLQRRAPPGARAPATLALLPEAA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH QRRCLCACAACLALGCAMAPGGLPALAAGAAVCALAVLAAADAAGAVWRYRACIRGWRVA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAGGVMP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]