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The map label for this gene is yhjC [H]

Identifier: 34498161

GI number: 34498161

Start: 2929893

End: 2930801

Strand: Reverse

Name: yhjC [H]

Synonym: CV_2706

Alternate gene names: 34498161

Gene position: 2930801-2929893 (Counterclockwise)

Preceding gene: 34498164

Following gene: 34498160

Centisome position: 61.69

GC content: 68.65

Gene sequence:

>909_bases
ATGGATAGAGTCCAAGCGATGCGAGTGTTCGTCGCCGTCGTCGACTGCGGCGGTTTCACCCGTGCGGCGCAACAGCTGCA
GTTGCCGCGCGCCACGGTGTCCAGCGCGGTGCAGCAGTTGGAGGCGCAACTGGGCGCGCGGTTATTGCACCGGACCACGC
GGCGGGTGCAGCTGACCCTGGACGGCGGCACTTTCTACGAGCGCTGCCAGCAGCTGCTGGCGGATTTCGACGAGCTGGAG
TCCTTGTTCAGCCAACAGGGCGCCAGTCCGCGCGGCAAGCTGCGCATAGACGTGCCGGGACCAATCGGCCGGCAGGTGCT
GGCGCCGGCGTTGCCGGAATTCTTCCGGCTGTATCCCGGCATCGAACTGGAGCTGGGCGTGACCGACCGGCCGGTGGACT
TGATCCAGGAAGGGGTCGATTGCGTGATCCGGGTCGGGGCGCTGGCGGAGTCGCGGCTGGTGGCGCGGCGGATCGGCATG
CTGCCGCAGGGCAATTACGCCAGCCCGGATTATCTGGCCGCTTTCGGCGCGCCGGCTTCGCCGGACGCGCTGGCCGGCCA
TCGCGCGGTCAACTACGCGTCGCCGTCCACCGGCAAGGTGTTTGCCTGGGAATATCTGCAAGACGGCGAGCGGCGCGAGC
TGGCGTTGCAGTCCCTGGTCAGCGTCAACCAGGTGGAAAGCTATATCGCTTGCGCGCTGGCGGGACTGGGCATGATCCAG
CTGCCGCGCTACGACGCCGAACCGCATGTCGCGGCCGGGGCGTTGGTGGAGGTGCTGGCCGATTGGCCGCCGCCGGCGAT
GCCGGTGTCGGTGCTGTATCCGCACCGGCGCCATCTGTCGCGGCGAGTGCAGGTGTTCGTCGAGTGGGCAGGCGCGTTGC
TGCGCGAACGCTTGCGGCTGGGGGCGTGA

Upstream 100 bases:

>100_bases
GCCTGCAGTTGACGCTTTGCAGTGTATTGCCGGGTTTAATCCGGATAAACGGCGCTTTATTGTTTACACTATCCAGAAAA
ACTGACTAATTGGAGCGGGC

Downstream 100 bases:

>100_bases
GCGCGTCGCTACGATCGCTCTGAAAAAGATAGCAAGTGGAACTGTTTTGTAAATTCATTGCCATAACAGCTTATTTTTGT
AAATAACTTGTTGGCAATGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDRVQAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGTFYERCQQLLADFDELE
SLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELELGVTDRPVDLIQEGVDCVIRVGALAESRLVARRIGM
LPQGNYASPDYLAAFGAPASPDALAGHRAVNYASPSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQ
LPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLRLGA

Sequences:

>Translated_302_residues
MDRVQAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGTFYERCQQLLADFDELE
SLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELELGVTDRPVDLIQEGVDCVIRVGALAESRLVARRIGM
LPQGNYASPDYLAAFGAPASPDALAGHRAVNYASPSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQ
LPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLRLGA
>Mature_302_residues
MDRVQAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGTFYERCQQLLADFDELE
SLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELELGVTDRPVDLIQEGVDCVIRVGALAESRLVARRIGM
LPQGNYASPDYLAAFGAPASPDALAGHRAVNYASPSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQ
LPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLRLGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=43.9597315436242, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.4947735191638, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=32.0689655172414, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=28.3783783783784, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=30.1754385964912, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=283, Percent_Identity=33.5689045936396, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=29.0102389078498, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.7627118644068, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789173, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=34.4155844155844, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI145693105, Length=260, Percent_Identity=21.9230769230769, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790399, Length=144, Percent_Identity=28.4722222222222, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33090; Mature: 33090

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVQAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTL
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DGGTFYERCQQLLADFDELESLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPG
CCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
IELELGVTDRPVDLIQEGVDCVIRVGALAESRLVARRIGMLPQGNYASPDYLAAFGAPAS
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
PDALAGHRAVNYASPSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQ
CCHHHCCCEECCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLRL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GA
CC
>Mature Secondary Structure
MDRVQAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTL
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DGGTFYERCQQLLADFDELESLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPG
CCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
IELELGVTDRPVDLIQEGVDCVIRVGALAESRLVARRIGMLPQGNYASPDYLAAFGAPAS
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
PDALAGHRAVNYASPSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQ
CCHHHCCCEECCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLRL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]