Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
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Accession | NC_005085 |
Length | 4,751,080 |
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The map label for this gene is bscZ [H]
Identifier: 34498131
GI number: 34498131
Start: 2896544
End: 2897692
Strand: Reverse
Name: bscZ [H]
Synonym: CV_2676
Alternate gene names: 34498131
Gene position: 2897692-2896544 (Counterclockwise)
Preceding gene: 34498132
Following gene: 34498130
Centisome position: 60.99
GC content: 68.41
Gene sequence:
>1149_bases ATGTCGGCCGTTTCCATCCCGCTGTTCGCGGCGTTGCTGCTGGACGCGCTGCCGGCATTGGCGGCCCCCTGCGATGGCTG GCCGGACTGGCAGGCGTTCCTGAAGAACTATGTTTCCGGCGACGGCAGGGTGGTGGATCGCAGCCAGGACGCCAGGCCCA CCACCTCGGAAGGCCAAAGCTACGCCTTGTTCTTCGCATTGGCGGCCAACGACCGGCCGGCGTTCGACCGACTGCTGGCC TGGACCCGCGACAATCTGGCCGACGGCGATCTGGGCGCGCGCCTGCCGGCCTGGTTGTGGGGGCGGGGGCAGGACGGCGG ATGGAAGGTATTGGACGACAACAGCGCGTCGGATTCCGACATGTGGCTCGCTTACGACCTGCTGGAGGCTGGGCGGTTGT GGCGCGAGCCGAGCTATGCGGCGCAGGGCAGGCAGCTGGCGCTCCGGATCCTGAGGGAAGAAACCGCCGACCTGCCCGGA CTGGGCCTGACGCTGCTGCCCGGCAAGGATGGCTTCTTGTTTTCCGACGGCGGTGCCCGGCTCAATCCCAGTTACCTGCC GCCGCAGCTGCTGGCCCGTTTCGCCTACGGCTTGCCTGATTCCGACTGGGCGAAGCTGCCGAGCGGCAGCGAACGCGTGC TGCTGGACGGCGCGCCGGCAGGCTTCGCGCCCGACTGGCTGAGACTTCAGCCGGGCAAGGGGCTGCAGCCGGACGCGGAC AGCAAGGCGAAGGGCGGCTACAGCGCCATCCGCGTCTACCTGTGGGCGGGCATGCTTGCGCCGTCCGCGCCGCTGCGCGC CGCGCTGCTGGCCAGGTACAAACCCATGGCGCGCTGGGTGGCGCGGGAGGGCGCGCCTCCCGAACAGGTGGACACCCGCA ATGGCAAGGCGCAGGGAAGGGCTCCGACGGGGTTTTCCTTCGCCTTGCTGCCCTTCTTGCAGGCACAGGGCGAAACGGAA GCGCTGCGGGCTCTGCTGCAGAGGCTGCGGGCCATGCCGCGAGACGATCGCGCCGATGCCTATTACGACCAGGTATTGAG GCTGTTCGGCCTGGGCTGGCTGCAGGGGCGCTTTCGTTTCGAGCGCAATGGCAAGTTGCTGCCCGCATGGGAGGGGAAAT GTTCCGCATCGCTTCCTGTATCGCGCTGA
Upstream 100 bases:
>100_bases TGCTGCTTGCCATGCTGACGGCGTTGGCGGTGCTGCTCCTGGCCTTCGTCATCCTGCGCATCCTCCGGATACTGGCGGCG CGCCGGCTGAGGGAGTCCTG
Downstream 100 bases:
>100_bases GCCTGCTGCTTGCGCCCGCGCGGGGCGCGGAGACGGCCGATCCCGCGCAGGCATTGCTGGAGCAGGCCAGGCAATGGCAG TTCCTGGAGCGGCCTCTGGA
Product: endo-1,4-D-glucanase
Products: NA
Alternate protein names: Carboxymethylcellulase; CMCase; Cellulase; Endo-1,4-beta-glucanase [H]
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MSAVSIPLFAALLLDALPALAAPCDGWPDWQAFLKNYVSGDGRVVDRSQDARPTTSEGQSYALFFALAANDRPAFDRLLA WTRDNLADGDLGARLPAWLWGRGQDGGWKVLDDNSASDSDMWLAYDLLEAGRLWREPSYAAQGRQLALRILREETADLPG LGLTLLPGKDGFLFSDGGARLNPSYLPPQLLARFAYGLPDSDWAKLPSGSERVLLDGAPAGFAPDWLRLQPGKGLQPDAD SKAKGGYSAIRVYLWAGMLAPSAPLRAALLARYKPMARWVAREGAPPEQVDTRNGKAQGRAPTGFSFALLPFLQAQGETE ALRALLQRLRAMPRDDRADAYYDQVLRLFGLGWLQGRFRFERNGKLLPAWEGKCSASLPVSR
Sequences:
>Translated_382_residues MSAVSIPLFAALLLDALPALAAPCDGWPDWQAFLKNYVSGDGRVVDRSQDARPTTSEGQSYALFFALAANDRPAFDRLLA WTRDNLADGDLGARLPAWLWGRGQDGGWKVLDDNSASDSDMWLAYDLLEAGRLWREPSYAAQGRQLALRILREETADLPG LGLTLLPGKDGFLFSDGGARLNPSYLPPQLLARFAYGLPDSDWAKLPSGSERVLLDGAPAGFAPDWLRLQPGKGLQPDAD SKAKGGYSAIRVYLWAGMLAPSAPLRAALLARYKPMARWVAREGAPPEQVDTRNGKAQGRAPTGFSFALLPFLQAQGETE ALRALLQRLRAMPRDDRADAYYDQVLRLFGLGWLQGRFRFERNGKLLPAWEGKCSASLPVSR >Mature_381_residues SAVSIPLFAALLLDALPALAAPCDGWPDWQAFLKNYVSGDGRVVDRSQDARPTTSEGQSYALFFALAANDRPAFDRLLAW TRDNLADGDLGARLPAWLWGRGQDGGWKVLDDNSASDSDMWLAYDLLEAGRLWREPSYAAQGRQLALRILREETADLPGL GLTLLPGKDGFLFSDGGARLNPSYLPPQLLARFAYGLPDSDWAKLPSGSERVLLDGAPAGFAPDWLRLQPGKGLQPDADS KAKGGYSAIRVYLWAGMLAPSAPLRAALLARYKPMARWVAREGAPPEQVDTRNGKAQGRAPTGFSFALLPFLQAQGETEA LRALLQRLRAMPRDDRADAYYDQVLRLFGLGWLQGRFRFERNGKLLPAWEGKCSASLPVSR
Specific function: Hydrolyzes carboxymethylcellulose [H]
COG id: COG3405
COG function: function code G; Endoglucanase Y
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 8 (cellulase D) family [H]
Homologues:
Organism=Escherichia coli, GI1789951, Length=378, Percent_Identity=50.2645502645503, Blast_Score=353, Evalue=8e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR002037 - InterPro: IPR019834 [H]
Pfam domain/function: PF01270 Glyco_hydro_8 [H]
EC number: =3.2.1.4 [H]
Molecular weight: Translated: 41844; Mature: 41713
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVSIPLFAALLLDALPALAAPCDGWPDWQAFLKNYVSGDGRVVDRSQDARPTTSEGQS CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC YALFFALAANDRPAFDRLLAWTRDNLADGDLGARLPAWLWGRGQDGGWKVLDDNSASDSD EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC MWLAYDLLEAGRLWREPSYAAQGRQLALRILREETADLPGLGLTLLPGKDGFLFSDGGAR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCC LNPSYLPPQLLARFAYGLPDSDWAKLPSGSERVLLDGAPAGFAPDWLRLQPGKGLQPDAD CCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCC SKAKGGYSAIRVYLWAGMLAPSAPLRAALLARYKPMARWVAREGAPPEQVDTRNGKAQGR CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC APTGFSFALLPFLQAQGETEALRALLQRLRAMPRDDRADAYYDQVLRLFGLGWLQGRFRF CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHCCEEEE ERNGKLLPAWEGKCSASLPVSR CCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure SAVSIPLFAALLLDALPALAAPCDGWPDWQAFLKNYVSGDGRVVDRSQDARPTTSEGQS CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC YALFFALAANDRPAFDRLLAWTRDNLADGDLGARLPAWLWGRGQDGGWKVLDDNSASDSD EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC MWLAYDLLEAGRLWREPSYAAQGRQLALRILREETADLPGLGLTLLPGKDGFLFSDGGAR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCC LNPSYLPPQLLARFAYGLPDSDWAKLPSGSERVLLDGAPAGFAPDWLRLQPGKGLQPDAD CCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCC SKAKGGYSAIRVYLWAGMLAPSAPLRAALLARYKPMARWVAREGAPPEQVDTRNGKAQGR CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC APTGFSFALLPFLQAQGETEALRALLQRLRAMPRDDRADAYYDQVLRLFGLGWLQGRFRF CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHCCEEEE ERNGKLLPAWEGKCSASLPVSR CCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]