Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
---|---|
Accession | NC_005085 |
Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498069
Identifier: 34498069
GI number: 34498069
Start: 2821516
End: 2821947
Strand: Reverse
Name: 34498069
Synonym: CV_2614
Alternate gene names: NA
Gene position: 2821947-2821516 (Counterclockwise)
Preceding gene: 34498070
Following gene: 34498068
Centisome position: 59.4
GC content: 68.06
Gene sequence:
>432_bases ATGAAGATTCGTCAGGCAAGAGCGGGGCTGTTTCTCTTGAGCGCGCTGGCGGCCGCGCCGTTCGTCCATGCGGCGGAGGG GGGCGGGGCGCACGTCGAAACGCTGCTCAAGACCGAGCGCTCCTGGGATGGCGCGCTTTACACATCCTATCCGCAGGGGC AGCCGGAGCTGACGATGGTGCGCATCACGATTCCGCCTCACTCCAGCCTGCCCTGGCATACCCACGCCTCTCCCAACGCC GCGTACGTGGTCAGCGGCGAGGTGACCGTGGAGACCCGGGACGGAAAGCGCCAGAAGCGCTTGCGCGCCGGCGACACGCT GGCGGAAATGGTGGGCACGCAGCATCGCGGCGTCACCGGGGACCAGCCGGTGGAACTATTGGTGTTCTACGCGGGAGCCG CCGGCGTGCCGCTCAGCGCCAAGGCCGAGTAA
Upstream 100 bases:
>100_bases AGCCGGAATGTGTTGAACCGCTCCGGCGCGGCGGCGTCGAACCGGCTCCGCCCGCGGGTGGCGGCATGCCTTTACCCAAC AAGTCACAGAAGGAGAAAAC
Downstream 100 bases:
>100_bases GGCCTGCGGCGGAGAGCCGCTCCCGGGGCGCGAGTCCCCGGGAGCGGCTTTTTCATTTGTTCGGGAGGCGGGTTTCCCGC CGCGGCGCAGTGACTGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Cupin Domain Protein; Cupin Domain-Containing Protein; Cupin 2 Barrel; Lipoprotein
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MKIRQARAGLFLLSALAAAPFVHAAEGGGAHVETLLKTERSWDGALYTSYPQGQPELTMVRITIPPHSSLPWHTHASPNA AYVVSGEVTVETRDGKRQKRLRAGDTLAEMVGTQHRGVTGDQPVELLVFYAGAAGVPLSAKAE
Sequences:
>Translated_143_residues MKIRQARAGLFLLSALAAAPFVHAAEGGGAHVETLLKTERSWDGALYTSYPQGQPELTMVRITIPPHSSLPWHTHASPNA AYVVSGEVTVETRDGKRQKRLRAGDTLAEMVGTQHRGVTGDQPVELLVFYAGAAGVPLSAKAE >Mature_143_residues MKIRQARAGLFLLSALAAAPFVHAAEGGGAHVETLLKTERSWDGALYTSYPQGQPELTMVRITIPPHSSLPWHTHASPNA AYVVSGEVTVETRDGKRQKRLRAGDTLAEMVGTQHRGVTGDQPVELLVFYAGAAGVPLSAKAE
Specific function: Unknown
COG id: COG1917
COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15270; Mature: 15270
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRQARAGLFLLSALAAAPFVHAAEGGGAHVETLLKTERSWDGALYTSYPQGQPELTMV CCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEE RITIPPHSSLPWHTHASPNAAYVVSGEVTVETRDGKRQKRLRAGDTLAEMVGTQHRGVTG EEEECCCCCCCCCCCCCCCEEEEEECEEEEEECCCCHHHHHHCCCHHHHHHCCCCCCCCC DQPVELLVFYAGAAGVPLSAKAE CCCEEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MKIRQARAGLFLLSALAAAPFVHAAEGGGAHVETLLKTERSWDGALYTSYPQGQPELTMV CCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEE RITIPPHSSLPWHTHASPNAAYVVSGEVTVETRDGKRQKRLRAGDTLAEMVGTQHRGVTG EEEECCCCCCCCCCCCCCCEEEEEECEEEEEECCCCHHHHHHCCCHHHHHHCCCCCCCCC DQPVELLVFYAGAAGVPLSAKAE CCCEEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA