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The map label for this gene is 34498051

Identifier: 34498051

GI number: 34498051

Start: 2803682

End: 2804905

Strand: Reverse

Name: 34498051

Synonym: CV_2596

Alternate gene names: NA

Gene position: 2804905-2803682 (Counterclockwise)

Preceding gene: 34498052

Following gene: 34498050

Centisome position: 59.04

GC content: 65.36

Gene sequence:

>1224_bases
ATGGAATATTTGTTCAAGCTGAAGTGGCTGAACGGCCCGCTGGCGGGGCGGGAGTTGGAATTGCCTGCCGGTGAGCTCCG
CTTGGGCGGCGACGACCCGGATATCGCGCTGGCGCTGGAAGAGGGGGCCGCGACCGTGCTGACCGTGACGCCGGAAGGCG
TGACGATGGCGCCGCCGGTCCCAGTGTGGGTAGAGGGTTTGCCGTGGGATGCTGGCCAGGCGCTGCCGTTGGGGCAGGCG
ATAGACCTGGCCGGACAGGGGCTGGTGCTGGCCGAAGCGGATGCGGCTTTGGCGATGTTGACGCTGCCGTCCCGACGGCT
GCCTGAAGTCGCCACGACTAAGCCCGCGGCCCGCTCCTGGCGTTTGGCCGGAGGCATCGTGCTGATTTGCGCCGCATTGG
CGACAGCGGTGCTGCTGTGGCCCAAGCCGGTCGAGCCGCCGCTGTTTGATGCGCGGGCTTGGCTGGCGCGGGAAATGGCC
GACCCAGGCCTGTCGGGTGTGAAAGCCGAATGGGATGAGCGCGGCGTGGTCCGTTTGAGTGGCTTGTGCGCCTCATCGAA
AGCCATCGAGCGGCTGCGGGGCCGGATGCGTGAGCAAGGCTTGAACTTCAGTGACGAGAGCCTGGACGCCGACACCTTGC
GCCGCCAGGTTCGCCAAGTGCTGGAATTGAACGGCTACCGCGAAGTGGAAGTCAGCGCCGGAGCCAAGCCAGATCAAGTT
GTTATCCACGGCGCGATCCAGGCCAATGCCGCCTGGCTGCGCGCGAGTACGCAGCTGAGGGCGATATCTGCGCTGAATGG
CTGGCGTGTGGTTAATGATCGAGCCGAATTGTTCGGCCGGTTGGTCGATCGGCTGAGTCGCCAGCGTCTGCTGGACGGAC
TGAGCATCGGCGTGTCCGGCCAGGAATTGCTGATCAGCGGACAGCTGCCTCCTGAGCGGGCCCGCGCGGTAGCGGCGGAG
GCAGCGGCCTTCAATGCGGACGGCACGCGGCTGAAAGCCCGTTTCCAGAACATCCCCGCCGCAGCGCCGGCGGCGAATAT
CTTGCCTGCGGCCATCGTCAGCGTGGGCGGCAACGCCAACTCCATTTATGTGGAACTGGCCAATGGCATGCGTCTGCAGC
AAGGCGGCACCTTGCCCAGCGGCTACCGGATTTATGCGCTGAGCCACACCGCGCTGACCCTGATACAGGAGCAGCGGCTG
GTTTCCATTCCACTTCATCTGTAA

Upstream 100 bases:

>100_bases
AGGCAAATTGTTCCGCTCTACCCAGAAAAATAGCCGCAGCACCGTTCGCCTATTCCTGATCAAGGCCGAACCCGCGGTTC
AGTCCTAAGGCGCAGTGAAA

Downstream 100 bases:

>100_bases
ATCGCCAATAAGGAAAAACCATGGCCCGTATCACTCATCTGGAAGACGCGCTGCGGCGGGACGTGCATGGCGCGGTGCGC
GATGCGCTGCTCGCCCGGCT

Product: type-III secretion protein

Products: NA

Alternate protein names: Type III Secretion Apparatus Protein; YscD/HrpQ Family Type III Secretion Apparatus Protein; Type III Secretion Apparatus; Type III Secretion Apparatus Protein YscD/HrpQ Family; Pathogenicity Island Protein

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MEYLFKLKWLNGPLAGRELELPAGELRLGGDDPDIALALEEGAATVLTVTPEGVTMAPPVPVWVEGLPWDAGQALPLGQA
IDLAGQGLVLAEADAALAMLTLPSRRLPEVATTKPAARSWRLAGGIVLICAALATAVLLWPKPVEPPLFDARAWLAREMA
DPGLSGVKAEWDERGVVRLSGLCASSKAIERLRGRMREQGLNFSDESLDADTLRRQVRQVLELNGYREVEVSAGAKPDQV
VIHGAIQANAAWLRASTQLRAISALNGWRVVNDRAELFGRLVDRLSRQRLLDGLSIGVSGQELLISGQLPPERARAVAAE
AAAFNADGTRLKARFQNIPAAAPAANILPAAIVSVGGNANSIYVELANGMRLQQGGTLPSGYRIYALSHTALTLIQEQRL
VSIPLHL

Sequences:

>Translated_407_residues
MEYLFKLKWLNGPLAGRELELPAGELRLGGDDPDIALALEEGAATVLTVTPEGVTMAPPVPVWVEGLPWDAGQALPLGQA
IDLAGQGLVLAEADAALAMLTLPSRRLPEVATTKPAARSWRLAGGIVLICAALATAVLLWPKPVEPPLFDARAWLAREMA
DPGLSGVKAEWDERGVVRLSGLCASSKAIERLRGRMREQGLNFSDESLDADTLRRQVRQVLELNGYREVEVSAGAKPDQV
VIHGAIQANAAWLRASTQLRAISALNGWRVVNDRAELFGRLVDRLSRQRLLDGLSIGVSGQELLISGQLPPERARAVAAE
AAAFNADGTRLKARFQNIPAAAPAANILPAAIVSVGGNANSIYVELANGMRLQQGGTLPSGYRIYALSHTALTLIQEQRL
VSIPLHL
>Mature_407_residues
MEYLFKLKWLNGPLAGRELELPAGELRLGGDDPDIALALEEGAATVLTVTPEGVTMAPPVPVWVEGLPWDAGQALPLGQA
IDLAGQGLVLAEADAALAMLTLPSRRLPEVATTKPAARSWRLAGGIVLICAALATAVLLWPKPVEPPLFDARAWLAREMA
DPGLSGVKAEWDERGVVRLSGLCASSKAIERLRGRMREQGLNFSDESLDADTLRRQVRQVLELNGYREVEVSAGAKPDQV
VIHGAIQANAAWLRASTQLRAISALNGWRVVNDRAELFGRLVDRLSRQRLLDGLSIGVSGQELLISGQLPPERARAVAAE
AAAFNADGTRLKARFQNIPAAAPAANILPAAIVSVGGNANSIYVELANGMRLQQGGTLPSGYRIYALSHTALTLIQEQRL
VSIPLHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43473; Mature: 43473

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYLFKLKWLNGPLAGRELELPAGELRLGGDDPDIALALEEGAATVLTVTPEGVTMAPPV
CCCEEEEEECCCCCCCCEEECCCCCEEECCCCCCEEEEEECCCEEEEEECCCCEEECCCC
PVWVEGLPWDAGQALPLGQAIDLAGQGLVLAEADAALAMLTLPSRRLPEVATTKPAARSW
CEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHCE
RLAGGIVLICAALATAVLLWPKPVEPPLFDARAWLAREMADPGLSGVKAEWDERGVVRLS
EHHCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
GLCASSKAIERLRGRMREQGLNFSDESLDADTLRRQVRQVLELNGYREVEVSAGAKPDQV
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
VIHGAIQANAAWLRASTQLRAISALNGWRVVNDRAELFGRLVDRLSRQRLLDGLSIGVSG
EEEEEEECCCCEEECCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QELLISGQLPPERARAVAAEAAAFNADGTRLKARFQNIPAAAPAANILPAAIVSVGGNAN
CEEEEECCCCHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
SIYVELANGMRLQQGGTLPSGYRIYALSHTALTLIQEQRLVSIPLHL
EEEEEECCCEEEECCCCCCCCEEEEEECHHHHHHHHHCCEEECCCCC
>Mature Secondary Structure
MEYLFKLKWLNGPLAGRELELPAGELRLGGDDPDIALALEEGAATVLTVTPEGVTMAPPV
CCCEEEEEECCCCCCCCEEECCCCCEEECCCCCCEEEEEECCCEEEEEECCCCEEECCCC
PVWVEGLPWDAGQALPLGQAIDLAGQGLVLAEADAALAMLTLPSRRLPEVATTKPAARSW
CEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHCE
RLAGGIVLICAALATAVLLWPKPVEPPLFDARAWLAREMADPGLSGVKAEWDERGVVRLS
EHHCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
GLCASSKAIERLRGRMREQGLNFSDESLDADTLRRQVRQVLELNGYREVEVSAGAKPDQV
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
VIHGAIQANAAWLRASTQLRAISALNGWRVVNDRAELFGRLVDRLSRQRLLDGLSIGVSG
EEEEEEECCCCEEECCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QELLISGQLPPERARAVAAEAAAFNADGTRLKARFQNIPAAAPAANILPAAIVSVGGNAN
CEEEEECCCCHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
SIYVELANGMRLQQGGTLPSGYRIYALSHTALTLIQEQRLVSIPLHL
EEEEEECCCEEEECCCCCCCCEEEEEECHHHHHHHHHCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA