| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498016
Identifier: 34498016
GI number: 34498016
Start: 2761338
End: 2762702
Strand: Reverse
Name: 34498016
Synonym: CV_2561
Alternate gene names: NA
Gene position: 2762702-2761338 (Counterclockwise)
Preceding gene: 34498018
Following gene: 34498014
Centisome position: 58.15
GC content: 48.5
Gene sequence:
>1365_bases ATGGCCAAATTAGCTGAGAATCAAAGCGTAGATAAGTCTGAAGAGCTGCAGAAGGCATTGCAGCAAGCACGATTCAAAGG GGAATTTTTGGGAGGCGGATTTAGTCTGGTACCTGCTACGCATCCATTAACACAGGAGTTTGGCTTAAGGATCGCAACTG CTGAGCAGAGTATTGGCGAGGCAAATTTACTTATTGTACAGCATGCGGATACAAAGGCTGTTCAATTCATCTTTCCGGCT CAAAGCAGGCAGCCGATTTACCAAGAGCAAGCCGTCCACGATTTTAGCTTCATTCAATTTAGACAGTTAGGGCCGACAAT CGCCGATGCAACAAAGTGGCTGGTTCAGGGAGCGCTCAAGGTCCCGCAAAACCTCGCGACCGACGCGGTTTGGGCGGCAG CCCGGGCGATCGAGATTGCCGACAAAACCGAAGGGTTTATTGCATTGGCTGATGGATATGTGCAACTGGCCACTCCTGAG CGGCTTGCCCAAGCGCGGGGTAAGCGGGTCTTGCTATTTGTTCATGGGATTTTTAGTTCTATTAAGGGAGCGTTCGATAG TCTCGGCTCTTCCAGTCAGGCTACAACCATGCAGGCTCTTGTCAATGCCTATCATGGCAATGTGTTTGGATATGATCATT GGACTATCAGCAAGACACCTCTTGAGAATGCGCTGGATCTACTGGATAAAATACCTGTGGGAGCGAATTGGTCAGTCGAT CTGGTGTGCCATAGCCGAGGAGGGTTGATCGCCCGTTCTTTGTTCGCCGACCCTTCGCCAAATGCCTTGCTTAAGAATGC TACGCTTAAGGGGATTTTAGCTAGGCGAGAGGGGAAGATCGGAGCGGTGGGTAAGGTTTTCTTTGTTGCAGCGGCTAATC AAGGATCACAACTTGCAAATCCGGATGATATATGTAATTTTCTTAATATGGCCGCATTGCTTGCTTCAAAGTCTCGGTGT TTCTCGTTGGATGTTGTGATTGGCTTAGCCCGATTGCTTGTCTCTGCGGCTTTTGATCTGCCAAGCATTCAAGAATTATC CACTACTTCTAGCCTTGTTAGCGATCTTAATGAGATCGGGAGCCTGATGTCCGATCAGAATGTGTACGGGGCACGCGCCG ACTTCGATTGTGCAAGGTCAGTGTTGTTGGAAGCGGGGGTGTTGCTCGATAAATTGTTGATGCAAGTCGATAACGATTTA GTGGTTCCATATCAGGGGGTGGCCTCTCCTAATCCAAATATACCCAATGCCAGATTGCTGGCTTTTGGTAATCCTGATGC CAAGCAAGGAACGGTATGGCATACCGAGTTTTTCGCACAGCCGGAAATGCACAAATTTTTGCTTGATAATTTGACAAGGG CATAA
Upstream 100 bases:
>100_bases TAGCGTTATTGATGTTTGCTGTGCGGGCAGATCTTTCATGGCTATATTATGCTTTGAGTATTTCGTTTCTTGCACGTTCT TTCATGGACAGGGGGTTGCG
Downstream 100 bases:
>100_bases GCAAGCGGTGTTTGCTTGGCTTTGCGCCGAGTGATCAGGATTATTTGGCCTTCAGTTTGTTACGCAGGGGGCATCGATCA AGATAAAATCCGGGCGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MAKLAENQSVDKSEELQKALQQARFKGEFLGGGFSLVPATHPLTQEFGLRIATAEQSIGEANLLIVQHADTKAVQFIFPA QSRQPIYQEQAVHDFSFIQFRQLGPTIADATKWLVQGALKVPQNLATDAVWAAARAIEIADKTEGFIALADGYVQLATPE RLAQARGKRVLLFVHGIFSSIKGAFDSLGSSSQATTMQALVNAYHGNVFGYDHWTISKTPLENALDLLDKIPVGANWSVD LVCHSRGGLIARSLFADPSPNALLKNATLKGILARREGKIGAVGKVFFVAAANQGSQLANPDDICNFLNMAALLASKSRC FSLDVVIGLARLLVSAAFDLPSIQELSTTSSLVSDLNEIGSLMSDQNVYGARADFDCARSVLLEAGVLLDKLLMQVDNDL VVPYQGVASPNPNIPNARLLAFGNPDAKQGTVWHTEFFAQPEMHKFLLDNLTRA
Sequences:
>Translated_454_residues MAKLAENQSVDKSEELQKALQQARFKGEFLGGGFSLVPATHPLTQEFGLRIATAEQSIGEANLLIVQHADTKAVQFIFPA QSRQPIYQEQAVHDFSFIQFRQLGPTIADATKWLVQGALKVPQNLATDAVWAAARAIEIADKTEGFIALADGYVQLATPE RLAQARGKRVLLFVHGIFSSIKGAFDSLGSSSQATTMQALVNAYHGNVFGYDHWTISKTPLENALDLLDKIPVGANWSVD LVCHSRGGLIARSLFADPSPNALLKNATLKGILARREGKIGAVGKVFFVAAANQGSQLANPDDICNFLNMAALLASKSRC FSLDVVIGLARLLVSAAFDLPSIQELSTTSSLVSDLNEIGSLMSDQNVYGARADFDCARSVLLEAGVLLDKLLMQVDNDL VVPYQGVASPNPNIPNARLLAFGNPDAKQGTVWHTEFFAQPEMHKFLLDNLTRA >Mature_453_residues AKLAENQSVDKSEELQKALQQARFKGEFLGGGFSLVPATHPLTQEFGLRIATAEQSIGEANLLIVQHADTKAVQFIFPAQ SRQPIYQEQAVHDFSFIQFRQLGPTIADATKWLVQGALKVPQNLATDAVWAAARAIEIADKTEGFIALADGYVQLATPER LAQARGKRVLLFVHGIFSSIKGAFDSLGSSSQATTMQALVNAYHGNVFGYDHWTISKTPLENALDLLDKIPVGANWSVDL VCHSRGGLIARSLFADPSPNALLKNATLKGILARREGKIGAVGKVFFVAAANQGSQLANPDDICNFLNMAALLASKSRCF SLDVVIGLARLLVSAAFDLPSIQELSTTSSLVSDLNEIGSLMSDQNVYGARADFDCARSVLLEAGVLLDKLLMQVDNDLV VPYQGVASPNPNIPNARLLAFGNPDAKQGTVWHTEFFAQPEMHKFLLDNLTRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49045; Mature: 48913
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLAENQSVDKSEELQKALQQARFKGEFLGGGFSLVPATHPLTQEFGLRIATAEQSIGE CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCEEEECHHCCCC ANLLIVQHADTKAVQFIFPAQSRQPIYQEQAVHDFSFIQFRQLGPTIADATKWLVQGALK CEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VPQNLATDAVWAAARAIEIADKTEGFIALADGYVQLATPERLAQARGKRVLLFVHGIFSS CCHHHHHHHHHHHHHHHEECCCCCCEEEEECCEEEECCHHHHHHHCCCEEEEEHHHHHHH IKGAFDSLGSSSQATTMQALVNAYHGNVFGYDHWTISKTPLENALDLLDKIPVGANWSVD HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCEEECCCCHHHHHHHHHHCCCCCCCEEE LVCHSRGGLIARSLFADPSPNALLKNATLKGILARREGKIGAVGKVFFVAAANQGSQLAN EEEECCCCCEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC PDDICNFLNMAALLASKSRCFSLDVVIGLARLLVSAAFDLPSIQELSTTSSLVSDLNEIG HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SLMSDQNVYGARADFDCARSVLLEAGVLLDKLLMQVDNDLVVPYQGVASPNPNIPNARLL HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEE AFGNPDAKQGTVWHTEFFAQPEMHKFLLDNLTRA EECCCCCCCCCEEEHHHHCCHHHHHHHHHHHCCC >Mature Secondary Structure AKLAENQSVDKSEELQKALQQARFKGEFLGGGFSLVPATHPLTQEFGLRIATAEQSIGE CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCEEEECHHCCCC ANLLIVQHADTKAVQFIFPAQSRQPIYQEQAVHDFSFIQFRQLGPTIADATKWLVQGALK CEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VPQNLATDAVWAAARAIEIADKTEGFIALADGYVQLATPERLAQARGKRVLLFVHGIFSS CCHHHHHHHHHHHHHHHEECCCCCCEEEEECCEEEECCHHHHHHHCCCEEEEEHHHHHHH IKGAFDSLGSSSQATTMQALVNAYHGNVFGYDHWTISKTPLENALDLLDKIPVGANWSVD HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCEEECCCCHHHHHHHHHHCCCCCCCEEE LVCHSRGGLIARSLFADPSPNALLKNATLKGILARREGKIGAVGKVFFVAAANQGSQLAN EEEECCCCCEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC PDDICNFLNMAALLASKSRCFSLDVVIGLARLLVSAAFDLPSIQELSTTSSLVSDLNEIG HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SLMSDQNVYGARADFDCARSVLLEAGVLLDKLLMQVDNDLVVPYQGVASPNPNIPNARLL HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEE AFGNPDAKQGTVWHTEFFAQPEMHKFLLDNLTRA EECCCCCCCCCEEEHHHHCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA