Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 34497960

GI number: 34497960

Start: 2697084

End: 2698289

Strand: Reverse

Name: yddU [C]

Synonym: CV_2505

Alternate gene names: 34497960

Gene position: 2698289-2697084 (Counterclockwise)

Preceding gene: 34497961

Following gene: 34497958

Centisome position: 56.79

GC content: 63.6

Gene sequence:

>1206_bases
ATGGGGTATCTGGACAAGTGGAAAGATCGGTCCGTGATGGTGGTGGACGACTCCGCCACCCACAGGCTGCTGGCGGTGGG
TTTGCTGGAGGAAATCGGCTTCGGCACGGTCCACGAGGCCGAGCACGGCCTGGATGCGATGAACAAGCTGGCCGCGCTGG
ACAGGGTGGACTTGGTGGTGACCGACCTCAACATGCCCTATATGGACGGCGTCAAGCTGCTGGAGAGCATTGCCGGCAAG
CTGCAGGGCAAGGTGCGCTTCGTCGCGGTGATGAGCGGCGTGCCGCGGGACGTGCTGGACACGGTGCAGGGCGTGGTGGA
CGCGTCGGAGCTGAATCTGCTGGCGGTCTTTCCCAAGCCGCTCAAGCTGGCCGAGTTGAGCCGGGTGCTGGACGGCTACA
ATCCCGAATGGTCCGGGACCGACGAGTCGGTGAGCAAGCTGAGCGTGAGCAAGGAGGATGTCGCCCATGCGCTGCAGCAG
CGCCAGCTGGTGCCGTACTACCAGCCCAAGGTGTCGATCAAGGACGACGTCCTGTTCGGCATGGAGGCGCTGGTGCGCTG
GGAGCATCCGCAATACGGCGTGCTGTCGCCGGCGATATTCGTCCATCACCTGGAAGAGGGCGAGCTGGCCATGCGCTTTT
TCTACCAGTTCCTGCGCGACGTCTGCGCCGCGATGAAGCAGTTCCTGGCGCTGCGGCCGGGGCTGCACGCGTCGATCAAT
CTGCCGGTGCCCTTGCTCGACGATGCCAGCCTGGTGGATGAAATGACTTCCATCGTGAAGTCCAGCGGCCTGCCCAGTGA
AAGCATCGCGCTGGAGGTGACGGAAACCTCGCTGATGTCCAACCTGGCCGCCTCGCTCGGCACGCTGGCGAGGCTGAGGC
TGAACGGATTCGGCCTGGCGATGGACGATTACGGCACCGGCTATTCGTCGATGAAGCAGCTGTCGCGCAGTCCGTTCACC
GAGCTGAAGATAGACCGGGAATTCGTCCATGACGCGGCCAGCAGTCCCAAGAAACTGGCCATCCTGACCTCGGCGGTGGC
GATGTGCCAGAAATTGCAGCTGTTGTCGGTGGCGGAGGGGGTGGAAACGAGGGAGGACTGGCAGCAGCTGGCCGCTTTGG
GTTGCGACATCGCGCAAGGCTACTACCACAGCAGCCCGCTGCCCTTCGACCAGTTCATGCAGTGGATGCGGGACAGCGGC
CACTGA

Upstream 100 bases:

>100_bases
TGTTCGGCATGCCGGCCGAGGCGATCAATCATGGCGGCGTGGACGAGGTGATGTCGCTGGAGCGCATCGCCCACATGCTG
GCAGGCATCAGGGGCTGATC

Downstream 100 bases:

>100_bases
GCGCGGGCATGAAAAAAGGGCCCGACGGGCCCTTTTGCACAACGCGCGCGGGGGATCAGGCGAAGTTCTTGGCCACGAAG
TCCCAGTTCACCAGCGCCCA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGYLDKWKDRSVMVVDDSATHRLLAVGLLEEIGFGTVHEAEHGLDAMNKLAALDRVDLVVTDLNMPYMDGVKLLESIAGK
LQGKVRFVAVMSGVPRDVLDTVQGVVDASELNLLAVFPKPLKLAELSRVLDGYNPEWSGTDESVSKLSVSKEDVAHALQQ
RQLVPYYQPKVSIKDDVLFGMEALVRWEHPQYGVLSPAIFVHHLEEGELAMRFFYQFLRDVCAAMKQFLALRPGLHASIN
LPVPLLDDASLVDEMTSIVKSSGLPSESIALEVTETSLMSNLAASLGTLARLRLNGFGLAMDDYGTGYSSMKQLSRSPFT
ELKIDREFVHDAASSPKKLAILTSAVAMCQKLQLLSVAEGVETREDWQQLAALGCDIAQGYYHSSPLPFDQFMQWMRDSG
H

Sequences:

>Translated_401_residues
MGYLDKWKDRSVMVVDDSATHRLLAVGLLEEIGFGTVHEAEHGLDAMNKLAALDRVDLVVTDLNMPYMDGVKLLESIAGK
LQGKVRFVAVMSGVPRDVLDTVQGVVDASELNLLAVFPKPLKLAELSRVLDGYNPEWSGTDESVSKLSVSKEDVAHALQQ
RQLVPYYQPKVSIKDDVLFGMEALVRWEHPQYGVLSPAIFVHHLEEGELAMRFFYQFLRDVCAAMKQFLALRPGLHASIN
LPVPLLDDASLVDEMTSIVKSSGLPSESIALEVTETSLMSNLAASLGTLARLRLNGFGLAMDDYGTGYSSMKQLSRSPFT
ELKIDREFVHDAASSPKKLAILTSAVAMCQKLQLLSVAEGVETREDWQQLAALGCDIAQGYYHSSPLPFDQFMQWMRDSG
H
>Mature_400_residues
GYLDKWKDRSVMVVDDSATHRLLAVGLLEEIGFGTVHEAEHGLDAMNKLAALDRVDLVVTDLNMPYMDGVKLLESIAGKL
QGKVRFVAVMSGVPRDVLDTVQGVVDASELNLLAVFPKPLKLAELSRVLDGYNPEWSGTDESVSKLSVSKEDVAHALQQR
QLVPYYQPKVSIKDDVLFGMEALVRWEHPQYGVLSPAIFVHHLEEGELAMRFFYQFLRDVCAAMKQFLALRPGLHASINL
PVPLLDDASLVDEMTSIVKSSGLPSESIALEVTETSLMSNLAASLGTLARLRLNGFGLAMDDYGTGYSSMKQLSRSPFTE
LKIDREFVHDAASSPKKLAILTSAVAMCQKLQLLSVAEGVETREDWQQLAALGCDIAQGYYHSSPLPFDQFMQWMRDSGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=258, Percent_Identity=31.0077519379845, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787541, Length=245, Percent_Identity=29.7959183673469, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=31.2, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1786507, Length=254, Percent_Identity=29.9212598425197, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=30.4, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=396, Percent_Identity=25.2525252525253, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=29.6747967479675, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=31.3807531380753, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI226510982, Length=256, Percent_Identity=28.90625, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081980, Length=264, Percent_Identity=26.8939393939394, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082096, Length=239, Percent_Identity=29.2887029288703, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788849, Length=233, Percent_Identity=27.0386266094421, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787410, Length=144, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788191, Length=70, Percent_Identity=48.5714285714286, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 44259; Mature: 44128

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYLDKWKDRSVMVVDDSATHRLLAVGLLEEIGFGTVHEAEHGLDAMNKLAALDRVDLVV
CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
TDLNMPYMDGVKLLESIAGKLQGKVRFVAVMSGVPRDVLDTVQGVVDASELNLLAVFPKP
EECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCEEEECCCC
LKLAELSRVLDGYNPEWSGTDESVSKLSVSKEDVAHALQQRQLVPYYQPKVSIKDDVLFG
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
MEALVRWEHPQYGVLSPAIFVHHLEEGELAMRFFYQFLRDVCAAMKQFLALRPGLHASIN
HHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
LPVPLLDDASLVDEMTSIVKSSGLPSESIALEVTETSLMSNLAASLGTLARLRLNGFGLA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
MDDYGTGYSSMKQLSRSPFTELKIDREFVHDAASSPKKLAILTSAVAMCQKLQLLSVAEG
ECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
VETREDWQQLAALGCDIAQGYYHSSPLPFDQFMQWMRDSGH
CCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GYLDKWKDRSVMVVDDSATHRLLAVGLLEEIGFGTVHEAEHGLDAMNKLAALDRVDLVV
CCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
TDLNMPYMDGVKLLESIAGKLQGKVRFVAVMSGVPRDVLDTVQGVVDASELNLLAVFPKP
EECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCEEEECCCC
LKLAELSRVLDGYNPEWSGTDESVSKLSVSKEDVAHALQQRQLVPYYQPKVSIKDDVLFG
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
MEALVRWEHPQYGVLSPAIFVHHLEEGELAMRFFYQFLRDVCAAMKQFLALRPGLHASIN
HHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
LPVPLLDDASLVDEMTSIVKSSGLPSESIALEVTETSLMSNLAASLGTLARLRLNGFGLA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
MDDYGTGYSSMKQLSRSPFTELKIDREFVHDAASSPKKLAILTSAVAMCQKLQLLSVAEG
ECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
VETREDWQQLAALGCDIAQGYYHSSPLPFDQFMQWMRDSGH
CCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]