| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is rbcL [H]
Identifier: 33863475
GI number: 33863475
Start: 1293386
End: 1294798
Strand: Reverse
Name: rbcL [H]
Synonym: PMT1205
Alternate gene names: 33863475
Gene position: 1294798-1293386 (Counterclockwise)
Preceding gene: 33863476
Following gene: 33863474
Centisome position: 53.71
GC content: 49.54
Gene sequence:
>1413_bases ATGAGCAAGAAGTATGACGCAGGGGTTAAGGAGTACAGAGACACCTACTGGACTCCCGATTATGTACCCCTAGACACTGA CTTACTGGCCTGTTTTAAATGCACTGGCCAGGAAGGAGTACCCAGAGAGGAAGTTGCTGCGGCTGTAGCGGCTGAATCTT CAACCGGTACTTGGTCCACAGTTTGGTCAGAGCTATTAACTGATCTTGAATTTTACAAGGGCCGTTGCTATCGCATCGAG GATGTCCCTGGAGACAAGGAGTCCTTTTACGCTTTTATTGCTTACCCTCTAGACCTTTTTGAAGAAGGTTCAATCACTAA CGTTCTGACCTCTTTGGTCGGTAATGTTTTTGGCTTCAAAGCATTACGCCATCTGCGTTTAGAAGATATCCGCTTCCCGA TGGCCTTCATCAAGACATGCGGTGGTCCTCCTAATGGCATTGTCGTAGAACGTGATCGTTTGAATAAGTACGGTCGCCCC TTACTTGGTTGCACCATTAAGCCAAAGCTTGGCCTTTCTGGTAAAAACTATGGACGGGTTGTTTATGAGTGTCTGCGTGG TGGTCTTGACTTAACCAAAGACGACGAAAACATCAACTCTCAGCCTTTCCAGCGTTGGCGCGAGCGCTTTGAGTTTGTTG CTGAGGCTGTCAAGCTTGCACAGCAAGAAACAGGAGAAGTCAAAGGTCATTATCTCAATTGCACTGCGACAACTCCTGAG GAGATGTATGAGCGTGCTGAGTTCGCTAAAGAACTCGACATGCCAATCATCATGCATGACTACATCACTGGTGGATTTAC CGCTAACACAGGTTTGGCGAATTGGTGCCGTAAAAACGGCATGCTGTTGCATATCCACCGCGCCATGCATGCGGTGATTG ACCGTCATCCCAAGCATGGAATTCACTTCCGTGTGCTTGCCAAGTGCCTGCGTCTTTCCGGTGGAGATCAACTCCATACA GGAACTGTGGTTGGCAAGCTGGAAGGTGATCGTCAGACCACTCTTGGTTATATCGACAACCTGCGTGAGTCTTTTGTTCC AGAAGATCGCAGTCGCGGTAACTTCTTTGACCAAGACTGGGGTTCCATGCCTGGTGTTTTTGCTGTGGCCTCTGGTGGTA TCCACGTTTGGCATATGCCAGCATTGTTGGCAATTTTTGGAGACGACTCCTGTCTACAGTTTGGTGGTGGTACTCATGGT CATCCATGGGGGTCTGCTGCTGGTGCCGCGGCTAACCGAGTGGCACTTGAAGCCTGTGTGAAAGCACGCAATGCCGGTCG TGAGATCGAGAAGGAAAGTCGCGACATCCTTATGGAAGCGGCGAAGCATAGCCCTGAGCTGGCCATCGCACTTGAGACTT GGAAAGAAATCAAGTTCGAGTTCGATACTGTCGACAAGCTCGACGTTCAGTAG
Upstream 100 bases:
>100_bases CAACGGCAATTTCTTAGGTCAGAAGGACTGAGGCCTTCTGCGATGGCTCTAAGAGCTTCGCCATCTCAACCTTCTATACC GACTTAAAAGGAGCTATTCC
Downstream 100 bases:
>100_bases AAAGTTTCATCAGAGGAGGCATCTGTCTCCTCAAAATCTTTCTTCAGATTTATTAGGCCAACACTTAGTCGTATTGGCCC TTAAACATCCACAATCCAAG
Product: ribulose bisophosphate carboxylase
Products: NA
Alternate protein names: RuBisCO large subunit [H]
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MSKKYDAGVKEYRDTYWTPDYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE DVPGDKESFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPNGIVVERDRLNKYGRP LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE EMYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ
Sequences:
>Translated_470_residues MSKKYDAGVKEYRDTYWTPDYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE DVPGDKESFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPNGIVVERDRLNKYGRP LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE EMYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ >Mature_469_residues SKKYDAGVKEYRDTYWTPDYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIED VPGDKESFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPNGIVVERDRLNKYGRPL LGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPEE MYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHTG TVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGH PWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ
Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan
COG id: COG1850
COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020888 - InterPro: IPR000685 - InterPro: IPR017443 - InterPro: IPR017444 [H]
Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]
EC number: =4.1.1.39 [H]
Molecular weight: Translated: 52573; Mature: 52442
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKYDAGVKEYRDTYWTPDYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH VWSELLTDLEFYKGRCYRIEDVPGDKESFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK HHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHH ALRHLRLEDIRFPMAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH EMYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEEECCCCCCCCC >Mature Secondary Structure SKKYDAGVKEYRDTYWTPDYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH VWSELLTDLEFYKGRCYRIEDVPGDKESFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK HHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHH ALRHLRLEDIRFPMAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH EMYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA