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The map label for this gene is rbcS [H]

Identifier: 33863474

GI number: 33863474

Start: 1292937

End: 1293278

Strand: Reverse

Name: rbcS [H]

Synonym: PMT1204

Alternate gene names: 33863474

Gene position: 1293278-1292937 (Counterclockwise)

Preceding gene: 33863475

Following gene: 33863473

Centisome position: 53.64

GC content: 48.83

Gene sequence:

>342_bases
ATGCCTTTCCAGAGCACAGTTGGTGACTATCAAACAGTCGCCACCCTGGAAACCTTCGGCTTCTTACCGCCGATGACCCA
GGACGAAATTTACGATCAAATTGCTTACATCATTGCTCAGGGATGGAGCCCTGTCATTGAGCACGTCCATCCAAGTGGTT
CCATGCAGACCTATTGGTCTTACTGGAAGTTACCTTTCTTTGGCGAGAAGGATCTGAACATGGTTGTAAGTGAGCTAGAA
GCTTGCCATCGTGCATATCCAGACCACCATGTGCGCATGGTTGGTTATGACGCATACACCCAAAGTCAAGGAACCGCATT
CGTGGTATTTGAAGGCCGTTGA

Upstream 100 bases:

>100_bases
CATCAGAGGAGGCATCTGTCTCCTCAAAATCTTTCTTCAGATTTATTAGGCCAACACTTAGTCGTATTGGCCCTTAAACA
TCCACAATCCAAGGTTCACC

Downstream 100 bases:

>100_bases
TTTAGTTTCGGTGTCTATCTCTTAATAGCCTCGATTTATTTTCGGGGCTATTAATCAACTCTCAGAGGCGACAAGCTTCT
TCTTCCCTTACGACGTTTTT

Product: ribulose bisphosphate carboxylase, small chain

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MPFQSTVGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPVIEHVHPSGSMQTYWSYWKLPFFGEKDLNMVVSELE
ACHRAYPDHHVRMVGYDAYTQSQGTAFVVFEGR

Sequences:

>Translated_113_residues
MPFQSTVGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPVIEHVHPSGSMQTYWSYWKLPFFGEKDLNMVVSELE
ACHRAYPDHHVRMVGYDAYTQSQGTAFVVFEGR
>Mature_112_residues
PFQSTVGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPVIEHVHPSGSMQTYWSYWKLPFFGEKDLNMVVSELEA
CHRAYPDHHVRMVGYDAYTQSQGTAFVVFEGR

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 12991; Mature: 12860

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFQSTVGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPVIEHVHPSGSMQTYWS
CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHH
YWKLPFFGEKDLNMVVSELEACHRAYPDHHVRMVGYDAYTQSQGTAFVVFEGR
HCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCEEEEEECC
>Mature Secondary Structure 
PFQSTVGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPVIEHVHPSGSMQTYWS
CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHH
YWKLPFFGEKDLNMVVSELEACHRAYPDHHVRMVGYDAYTQSQGTAFVVFEGR
HCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9002609 [H]