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The map label for this gene is fliA [C]

Identifier: 33863056

GI number: 33863056

Start: 859077

End: 859886

Strand: Direct

Name: fliA [C]

Synonym: PMT0784

Alternate gene names: 33863056

Gene position: 859077-859886 (Clockwise)

Preceding gene: 33863055

Following gene: 33863060

Centisome position: 35.63

GC content: 46.67

Gene sequence:

>810_bases
ATGTCAATAGAAAGTCAAGTCATGGCGCAAACTTCTTGCAAAACCTTGAGAAGAAAGAGAGCAGAGTGCTCTGGGAATCA
GCGTTCATTTTCATTGCCCAAATCGATACAAAAACGCAATGAGGCTGTAGTTGAACACCTTGGATTGGCGCACCTTGCAG
CAACTCGCCAAGCCACCCGTGGCGGTGAAGAACTGGATGATCTCATTCAAGAAGCAAGGCTGGGGTTAATCATGGCGATG
GAGAATTTCGATGCCAATCTTGGATTTAAAGCAAGTAGCTATGCAATGGCCCGTGCCAACGGCCAGATCCTCCATTTCCG
CAGAGACAGAAGCCAGATTGTGAGAGTGCCCTGGCGACTGAGAGACCTATATACCCGCGGCATGAGACTCAAGCAGAAGC
AGCAGAATGATGGCTTAAAACCTTTCACCGAAGAGCAACTGGCTGCACAATTAAATGTAAGTTCAGACCGCTGGCATCAA
GCTGCGGAAGCCATATGGCAGACACACCTTGTATCTCTGGATGCCAAAGAGAGTTCAACAGGTGGCAATCATGTTGAGAA
GAGAGTCCCATTATTGGAACGGCTCAAGTCACCAAAGCAGAAAGAACCGGATCTGCAATACCAATGGCTAAAAAAGGCTA
TTCAGCGTCTAACATCCCACCAGCAACACTTGCTTTACGCCCATTACATCGATGACATCAGCTTGAGACAGTTAGCAAAG
CGCGAAAAGATGAAGGAGAACAAGCTGCGAAGAGTTTTGCAAGGTTTAATTAAACAACTTCAACTTTGGTCCACAAAGAA
ATCTGATTAG

Upstream 100 bases:

>100_bases
ACAAACTTCACTCCTACGGTTGGCTGAAATCACCCCTAAGGAATCCGATGTTCATCCTTTAGTTGGTTTACCAGTGCTGC
AGAAAAGAAGAAAGTTAAGG

Downstream 100 bases:

>100_bases
CTGGTTAAGCAGCCAAACCAAGCCAAGCGGCGATTGCGATGGCAAAAACAGCAGCAAAGCTTGTCTGTAAACCATTAACA
AGTTCATTACTCAGCCAACT

Product: type III sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma; Type III Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sporulation Sigma Factor SigG; FliA/WhiG Subfamily RNA Polymerase Sigma-28 Factor; FliA/WhiG Subfamily RNA Polymerase Sigma; FliA/WhiG Family RNA Polymerase Sigma Factor; Group 3 RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit-Like; RNA Polymerase Sigma-B Factor; RNA Polymerase Sigma-28 Subunit; RNA Polymerarulation-Specific Sigma Factor; Sigma Factor Sigma; Sigma Factor; RNA Polymerase Sigma-37 Factor; B/F/G Subfamily RNA Polymerase Sigma-28 Subunit; RNA Polymerase Sigma Subunit RpsG/SigG

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAM
ENFDANLGFKASSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLKQKQQNDGLKPFTEEQLAAQLNVSSDRWHQ
AAEAIWQTHLVSLDAKESSTGGNHVEKRVPLLERLKSPKQKEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAK
REKMKENKLRRVLQGLIKQLQLWSTKKSD

Sequences:

>Translated_269_residues
MSIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAM
ENFDANLGFKASSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLKQKQQNDGLKPFTEEQLAAQLNVSSDRWHQ
AAEAIWQTHLVSLDAKESSTGGNHVEKRVPLLERLKSPKQKEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAK
REKMKENKLRRVLQGLIKQLQLWSTKKSD
>Mature_268_residues
SIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAME
NFDANLGFKASSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLKQKQQNDGLKPFTEEQLAAQLNVSSDRWHQA
AEAIWQTHLVSLDAKESSTGGNHVEKRVPLLERLKSPKQKEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAKR
EKMKENKLRRVLQGLIKQLQLWSTKKSD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Alternative Sigma Factor Is Specific For Class 3 Flagellar Operons. [C]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31129; Mature: 30998

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLAHLAATRQATR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEELDDLIQEARLGLIMAMENFDANLGFKASSYAMARANGQILHFRRDRSQIVRVPWRL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCHHH
RDLYTRGMRLKQKQQNDGLKPFTEEQLAAQLNVSSDRWHQAAEAIWQTHLVSLDAKESST
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GGNHVEKRVPLLERLKSPKQKEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAK
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
REKMKENKLRRVLQGLIKQLQLWSTKKSD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLAHLAATRQATR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEELDDLIQEARLGLIMAMENFDANLGFKASSYAMARANGQILHFRRDRSQIVRVPWRL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCHHH
RDLYTRGMRLKQKQQNDGLKPFTEEQLAAQLNVSSDRWHQAAEAIWQTHLVSLDAKESST
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GGNHVEKRVPLLERLKSPKQKEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAK
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
REKMKENKLRRVLQGLIKQLQLWSTKKSD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA