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The map label for this gene is ycf39

Identifier: 33862779

GI number: 33862779

Start: 557757

End: 558440

Strand: Direct

Name: ycf39

Synonym: PMT0506

Alternate gene names: NA

Gene position: 557757-558440 (Clockwise)

Preceding gene: 33862777

Following gene: 33862780

Centisome position: 23.14

GC content: 52.78

Gene sequence:

>684_bases
ATGGGCATCAAGCTGGCCATCAGTGGAGCCTCTGGCAAAACCGGCTATCGAGTTGCCGAGGAAGCCCTAAAGGAAGGGAA
TCAGGTGCGCCTGTTGATTCGTCCAAACTCCCATTTGCCCGACAATTTGAGCCAATGTGATCTACGGCGCTTGTCATTGG
CAGATGAAACAGCCCTCGATGAAGCCCTTGAAGGCTGTGACGCGCTTGTTCTCGCAACAGGTGCCAGACCCTCTGCAGAT
CTAACCGGCCCTGCGCGGGTGGATGCCTTAGGGGTAAGACAGCAAATCGCCAGTTGCAAAAGGGTTGGCGTCAAAAGGGT
TGTTCTGGTTAGTTCGCTTTGTGCCGGACGATGGTTGCATCCACTCAATCTTTTTGGCCTGATCTTGGTTTGGAAACGCC
TAGGAGAACAGGCTCTAGAGCAAAGCGGTCTCGATTGGACTGTGATCAGACCGGGTGGCCTGAATGATCGAGAAGAGAAC
CTAGAGAAAGAAGGGATCCTTTTTACAGGGGCCGATTGTCAGGAAGACGCTAGAATTCCGCGTCGATTAGTAGCGCGATG
CTGCATAGAAGCCCTCAAGACTCCATCGTCAATTGGCCGCATCATCGAGGTCACGAGCGACCCTGACCTGAAGAGAATCA
CATTGCAACAAGCACTCAAAACCATCAATGCTCTGGCGTCATAG

Upstream 100 bases:

>100_bases
CAAGGCGAAAATCCAAGCGTTTTGAAGCTAGAGCATTGATCAAACAACAGCGTTCAATATATATTTTCGCTAGACCTTGT
GCAATCTTCAGCAAAACGAC

Downstream 100 bases:

>100_bases
TGTCGTCAGATGAGTAGTATCTGGTCATGAACACCAATGCCAGAATTGATGCCTTACAGCTGATGCTTACCGACCTGCGT
ACTCGTAATGAACCCATTCG

Product: NADH-flavin reductase

Products: NA

Alternate protein names: NADH-Flavin Reductase; Nucleoside-Diphosphate-Sugar Epimerase; NAD Dependent Epimerase/Dehydratase; NmrA Family Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Nucleoside-Diphosphate-Sugar Epimerase-Like; NAD-Dependent Epimerase/Dehydratase Family Protein; NmrA-Like; NAD Dependent Epimerase/Dehydratase Family Protein

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGIKLAISGASGKTGYRVAEEALKEGNQVRLLIRPNSHLPDNLSQCDLRRLSLADETALDEALEGCDALVLATGARPSAD
LTGPARVDALGVRQQIASCKRVGVKRVVLVSSLCAGRWLHPLNLFGLILVWKRLGEQALEQSGLDWTVIRPGGLNDREEN
LEKEGILFTGADCQEDARIPRRLVARCCIEALKTPSSIGRIIEVTSDPDLKRITLQQALKTINALAS

Sequences:

>Translated_227_residues
MGIKLAISGASGKTGYRVAEEALKEGNQVRLLIRPNSHLPDNLSQCDLRRLSLADETALDEALEGCDALVLATGARPSAD
LTGPARVDALGVRQQIASCKRVGVKRVVLVSSLCAGRWLHPLNLFGLILVWKRLGEQALEQSGLDWTVIRPGGLNDREEN
LEKEGILFTGADCQEDARIPRRLVARCCIEALKTPSSIGRIIEVTSDPDLKRITLQQALKTINALAS
>Mature_226_residues
GIKLAISGASGKTGYRVAEEALKEGNQVRLLIRPNSHLPDNLSQCDLRRLSLADETALDEALEGCDALVLATGARPSADL
TGPARVDALGVRQQIASCKRVGVKRVVLVSSLCAGRWLHPLNLFGLILVWKRLGEQALEQSGLDWTVIRPGGLNDREENL
EKEGILFTGADCQEDARIPRRLVARCCIEALKTPSSIGRIIEVTSDPDLKRITLQQALKTINALAS

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24595; Mature: 24464

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKLAISGASGKTGYRVAEEALKEGNQVRLLIRPNSHLPDNLSQCDLRRLSLADETALD
CCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EALEGCDALVLATGARPSADLTGPARVDALGVRQQIASCKRVGVKRVVLVSSLCAGRWLH
HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLNLFGLILVWKRLGEQALEQSGLDWTVIRPGGLNDREENLEKEGILFTGADCQEDARIP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEECCCCHHHHHHH
RRLVARCCIEALKTPSSIGRIIEVTSDPDLKRITLQQALKTINALAS
HHHHHHHHHHHHCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GIKLAISGASGKTGYRVAEEALKEGNQVRLLIRPNSHLPDNLSQCDLRRLSLADETALD
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EALEGCDALVLATGARPSADLTGPARVDALGVRQQIASCKRVGVKRVVLVSSLCAGRWLH
HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLNLFGLILVWKRLGEQALEQSGLDWTVIRPGGLNDREENLEKEGILFTGADCQEDARIP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEECCCCHHHHHHH
RRLVARCCIEALKTPSSIGRIIEVTSDPDLKRITLQQALKTINALAS
HHHHHHHHHHHHCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA