Click here to switch to the map view.

The map label for this gene is petJ

Identifier: 33862735

GI number: 33862735

Start: 516010

End: 516387

Strand: Direct

Name: petJ

Synonym: PMT0462

Alternate gene names: NA

Gene position: 516010-516387 (Clockwise)

Preceding gene: 33862733

Following gene: 33862737

Centisome position: 21.4

GC content: 48.15

Gene sequence:

>378_bases
ATGAAACTACAGATTCGTCTGAGGCGACTTGTACTTGAACTTGGGGGCCAAACTGCAGGATTATTAATCCTGATCTCTAC
ACTCTTGATCCATCCTATTGGCACCATTGCATTGGATACCGATGCTGGAGGATCGTTATTCAAGCAACACTGTTCAGGGT
GTCATGTAAATGGTGGCAATATCATCCGACGTAACAAAACCCTTAGGCTCAAAGCACTAGAGCGCAATGGTCTAGATAAT
CCTCAAGCAATCGCCAGAGTGGCTCGAGAAGGAATCGGGCAAATGTCTGGTTACGAGGATGTTCTCGGCGATAGTGGAGA
TCAGCTCGTGGCGGCCTGGATATGGGCTCAAGCTCAGAATGCTTGGACCCAAGGGTAA

Upstream 100 bases:

>100_bases
CTTTCACGGTGGTGCCAAGCCCATGCGCAACTGTTAAAGCGGTATCAGCAGATCACAACAGATCACTACGGCAGACTTAG
GCGTTACTGCTGATGATTGC

Downstream 100 bases:

>100_bases
ACCTCAAGAGAGGTCCATATTCCTTCCTTCCAGTAAACGTCTTGCTCTAGAAGCTTCCTAACAACATCAAGACTTGCGGC
TTCGAAAATCCCAAAAACAT

Product: cytochrome c, class IC:cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKLQIRLRRLVLELGGQTAGLLILISTLLIHPIGTIALDTDAGGSLFKQHCSGCHVNGGNIIRRNKTLRLKALERNGLDN
PQAIARVAREGIGQMSGYEDVLGDSGDQLVAAWIWAQAQNAWTQG

Sequences:

>Translated_125_residues
MKLQIRLRRLVLELGGQTAGLLILISTLLIHPIGTIALDTDAGGSLFKQHCSGCHVNGGNIIRRNKTLRLKALERNGLDN
PQAIARVAREGIGQMSGYEDVLGDSGDQLVAAWIWAQAQNAWTQG
>Mature_125_residues
MKLQIRLRRLVLELGGQTAGLLILISTLLIHPIGTIALDTDAGGSLFKQHCSGCHVNGGNIIRRNKTLRLKALERNGLDN
PQAIARVAREGIGQMSGYEDVLGDSGDQLVAAWIWAQAQNAWTQG

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13510; Mature: 13510

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQIRLRRLVLELGGQTAGLLILISTLLIHPIGTIALDTDAGGSLFKQHCSGCHVNGGN
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCC
IIRRNKTLRLKALERNGLDNPQAIARVAREGIGQMSGYEDVLGDSGDQLVAAWIWAQAQN
EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHH
AWTQG
CCCCC
>Mature Secondary Structure
MKLQIRLRRLVLELGGQTAGLLILISTLLIHPIGTIALDTDAGGSLFKQHCSGCHVNGGN
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCC
IIRRNKTLRLKALERNGLDNPQAIARVAREGIGQMSGYEDVLGDSGDQLVAAWIWAQAQN
EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHH
AWTQG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]