| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862703
Identifier: 33862703
GI number: 33862703
Start: 484407
End: 486008
Strand: Direct
Name: 33862703
Synonym: PMT0430
Alternate gene names: NA
Gene position: 484407-486008 (Clockwise)
Preceding gene: 33862702
Following gene: 33862712
Centisome position: 20.09
GC content: 52.31
Gene sequence:
>1602_bases ATGCATTCAGATCTCAAGCAGAAGCACTGGAGGCCGCAATGGTTTGTCCGTGGAGATGTCGACGGATTCCTAGGACTTGG CCTCGATAACTTGATTCAAGTCCTCTTGATAATTGCCTTATGCCGCAACGTGCTCGGCTATCCGAATGAATTAGTTTTCG GCACAATCCTTCCTGCCACAGGAATAAGCCTGCTGATAGGCAACCTTGCCTACGCGCATCAGGCTCATCAACTTGCCAGC ATCGAAAAACGTAGTGATCGGACAGCTCTGCCCTACGGAATCAACACCGTGAGCCTGTTTGCGTATGTGTTTTTGGTAAT GCTCCCTGTGAAACTCACCGCATTGGGCCAGGGAATGGATGAGGCAAGTGCTGTTCGCCTTTCCTGGCAAGCAGGGATGG TGGCTTGCCTGGGCTCAGGGCTGATCGAAACAGTAGGGGCTTTTACAGCAGGGGTACTGCGTCGCTGGCTGCCTAGGGCT GCATTACTTGCCACTCTCGCCGGCATTGCTCTTGGCTACATCGCCCTTGGCTTTCTGCTGCGTACCTATGCCCAACCTGT AGTGGGGCTGACAGTACTAGCAATTGTTCTGGTCACCTATTACGGACGCTTGCGATTGCCCATTCCTGGTGGCTTGCTTG CTGTTGTTATTGGCGTGGGGCTTGCTTGGAGTACTGGATTAATCGATAGCGACGCTAGCCGTTGGAGTCAGGAAGCAAGT CAGATTGGCTTGCGCCTTCCTCACCTAGAAATCGCCAATCTTTGGAATGCTCGTGGCCAGCTGCTGCCCTGGCTAGGGGT GATTGTGCCAATGGGCCTATTCAACGTGCTGGGATCTCTTCAAAACATCGAAAGCGCAGAGGCGGCAGGTGATCGTTATT GCGTTCGAAGCTCTTTACTGATCGATGGCATTGGCACAATGGCTGCCGCAGGTCTGGGGTCTTGTTTTCCTACAACCATT TATATCGGCCATCCAGCCTGGAAGGAAATGGGGGCTCGCATTGGCTATTCCTGGCTAAATGGCTTGGTAATGGGTAGCGC TTGTCTTCTAGGTGTTTTTGGTTTGGTCGCAGAGTTGGTACCTATTGAGGCAGGCATGGCGATCGTGCTCTATATCGGCA TCGTGATTGCTGCTCAAGCCTTTCAAGCCACTCCCAGCACCCATGCACCGGCAGTAGCTCTTGGCCTGCTTCCTGGATTA GCAGGATGGGGTGCATCACTGATCAAGGCTGGTTTGCGCGCAGGAGGAGCCGGAAGCAATTCAGAACCTTTTAATTCAGC TTTATTAGGAAGGCTTCAAGAAGCTGATGTATGGGCAAGTGGTGCTTTTGCCCTTGAGCAAGGACAAATTATTACCGCCA TGCTGCTAGCGGCAATGTTGGTTTATGTGATCGAACAACGCCTTTTAGCAGCAAGCTTTACTTCTTTCCTCGCATCTGCA GCCTCATGGATTGGGATCATCCACGCTTGGCGATTCACCCAGGCCGATACTGTTCTGGAGCTTGGCTGGGGAGTTGGTAG CTCCTGGGCAACGGGCTATCTACTAATGGCAGTTGTGTTCATGCTCGCCGGTTTGCATCAGCGCAGATTGATTTCTAGTT GA
Upstream 100 bases:
>100_bases AACTGCCTCCTACTTAACAAGCAAGGCTCTTTTGAAAAGACGTTGTCTTGCATCATCAGGAAGTAGCAAGACATGATTGA ACTGGTCTTACCCAACTGCC
Downstream 100 bases:
>100_bases CAAAACTGTTTTCAAAATGCATAAGTTAATGAAATGAGCGTAGGTAAAACCACTGGATCAATTCTGCCCGACTGCTACAT GTCACGCCTCTTCGTTTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; MFS Transporter Xanthine/Uracil Permease; Permease Subfamily Putative; Sulphate Transporter; Regulator; Transcriptional Regulator; Permease Subfamily
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWNARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRLLAASFTSFLASA ASWIGIIHAWRFTQADTVLELGWGVGSSWATGYLLMAVVFMLAGLHQRRLISS
Sequences:
>Translated_533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWNARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRLLAASFTSFLASA ASWIGIIHAWRFTQADTVLELGWGVGSSWATGYLLMAVVFMLAGLHQRRLISS >Mature_533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWNARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRLLAASFTSFLASA ASWIGIIHAWRFTQADTVLELGWGVGSSWATGYLLMAVVFMLAGLHQRRLISS
Specific function: Unknown
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56422; Mature: 56422
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPAT CCCCCHHHCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GISLLIGNLAYAHQAHQLASIEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRAALLATLAGIALGYIALGFLL CHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS HHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIGLRLPHLEIANLWNARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLL HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IDGIGTMAAAGLGSCFPTTIYIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELV HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGLAGWGASLIKAGLRAGGAGSN HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRLLAASFTSFLASA CCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASWIGIIHAWRFTQADTVLELGWGVGSSWATGYLLMAVVFMLAGLHQRRLISS HHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC >Mature Secondary Structure MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPAT CCCCCHHHCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GISLLIGNLAYAHQAHQLASIEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRAALLATLAGIALGYIALGFLL CHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS HHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIGLRLPHLEIANLWNARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLL HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IDGIGTMAAAGLGSCFPTTIYIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELV HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGLAGWGASLIKAGLRAGGAGSN HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRLLAASFTSFLASA CCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASWIGIIHAWRFTQADTVLELGWGVGSSWATGYLLMAVVFMLAGLHQRRLISS HHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA