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The map label for this gene is yibD

Identifier: 30065109

GI number: 30065109

Start: 4013434

End: 4013574

Strand: Direct

Name: yibD

Synonym: S4114

Alternate gene names: 30065109

Gene position: 4013434-4013574 (Clockwise)

Preceding gene: 30065108

Following gene: 30065113

Centisome position: 87.26

GC content: 53.19

Gene sequence:

>141_bases
ATGTATAAGCGCCTGATTACCAATGTGCGCAGCGTGAAGGTCGGTTACCAGGCGTTACTGTGGTCTTTCCGCTTATGGCA
ATGGCGCGACAAAACGCGGTCGCACCATCGCATTACGCGTAGCGCCTTTAATTTGCGCTAG

Upstream 100 bases:

>100_bases
CATAAAACACTATCAGTAAGTTGGAGTCATTACCCGGTGCGCAAAGAGCCGGATATTCTTACCCGCCAACGGATGATTGC
CGAGATATTTACTTCCGGGT

Downstream 100 bases:

>100_bases
CGTTAAACTTCGCCGCTTCGGGCTGTTTGCCCCAGCCTTGCCACTGATGCTGGAAGTAAACGATCAGCGTGCTCTGGCTG
ATGCTTTCGCTTAATACTTC

Product: putative regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 46; Mature: 46

Protein sequence:

>46_residues
MYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR

Sequences:

>Translated_46_residues
MYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
>Mature_46_residues
MYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family

Homologues:

Organism=Escherichia coli, GI1790044, Length=46, Percent_Identity=100, Blast_Score=97, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIBD_ECOLI (P11290)

Other databases:

- EMBL:   U00039
- EMBL:   U00096
- EMBL:   AP009048
- EMBL:   X06690
- PIR:   S47836
- RefSeq:   AP_004176.1
- RefSeq:   NP_418072.1
- ProteinModelPortal:   P11290
- SMR:   P11290
- STRING:   P11290
- EnsemblBacteria:   EBESCT00000000184
- EnsemblBacteria:   EBESCT00000016785
- GeneID:   948140
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW3590
- KEGG:   eco:b3615
- EchoBASE:   EB1245
- EcoGene:   EG11266
- eggNOG:   COG0463
- GeneTree:   EBGT00050000008877
- HOGENOM:   HBG417197
- OMA:   QDIPWTT
- ProtClustDB:   PRK10073
- BioCyc:   EcoCyc:EG11266-MONOMER
- Genevestigator:   P11290
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: 2.-.-.- [C]

Molecular weight: Translated: 5777; Mature: 5777

Theoretical pI: Translated: 12.51; Mature: 12.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
>Mature Secondary Structure
MYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748