Click here to switch to the map view.

The map label for this gene is shiE

Identifier: 30065054

GI number: 30065054

Start: 3955687

End: 3956658

Strand: Reverse

Name: shiE

Synonym: S4829

Alternate gene names: NA

Gene position: 3956658-3955687 (Counterclockwise)

Preceding gene: 30065057

Following gene: 30065052

Centisome position: 86.03

GC content: 41.15

Gene sequence:

>972_bases
TTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACGCCTTCAG
TAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAA
GTTGGCAGCATTACCCCTGGAGTGAAACAAAGGCAGCTTATCGTTGTTTTTCAAACGATAAAGTCTCTGCTAATAAAATC
ATGACTCCTCACAAAGAAAATATCACTGAAAGAGCTCAGCAGTTTAAAAGAGTTTTAGTTTTACAGGATACAACAGAACT
TAATTATTCTGGTCAGAAAGAAAAACAAGGAGTTGGTCCCAAAAAACATAAAGATGAAAGAAACTTATTTCTTCATCCTC
AACTCGTCATCAGTGAGTCAGGTGTTTGCCTCGGTGTTTATGATGACTATCAGTGGTTCAGGGATGAATTAAAAACCAGT
AAAAATACCCGACAAGAAATCTGCAATGATTTACTTCATAAAAAACATGTCAGTGAAAAAGAAACCTGGCGTTGGGTTGA
AGGATATAATAAAGCAACAGAACTGGCTCGCCAATGCCCTGATACCCATGTATTGTCAATTTCTGATCGTGAAGGCGATT
TTTATGACCTGTTTGAACGCGCAGCGCAGACTCCCGGAATAAAAGCTGACTGGCTTGTCAGAATGAAATTTAATAACAGA
GCAACGCTGAATATTAATGGTAAACGGGATCATAGGTTGTTGCACGAAAGAATCATGGAGATTACACCGCAGCAACTGGT
TGAATTCACTATACCTGATGGGCGGGGGCAGCAAGCCAGAACACTGCCTGACATGCTTTCATCAGACGCAGGTCCTCTCT
CATATCCTCTGATTTACTCCAGTAAGGTGATGATCATATCTTTATTTGATAGTACGGTAATGCCAGATAAATACAGACAC
AATGGTAAATAA

Upstream 100 bases:

>100_bases
CCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAG
GCGGTGTAAGTGAACTGTAG

Downstream 100 bases:

>100_bases
TATAGTTGCAAATAATGCTGCCATAATCAGCGCGATTGCGACACCTGTTTTCGATACCAGCGGCACCAGCAAAGCGCACA
GTCCATAGCCAAGTGTGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Transposase; Transposase IS4 Family Protein; Transposase IS4 Family; Glycosy Hydrolase Family; Ankyrin-Repeat Protein A; Efflux Pump Component MtrF; IS4 Family Transposase; Outer Membrane Fimbrial User Protein; Minor Fimbrial Subunit; Allantoinase

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAAYRCFSNDKVSANKI
MTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTS
KNTRQEICNDLLHKKHVSEKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMIISLFDSTVMPDKYRH
NGK

Sequences:

>Translated_323_residues
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAAYRCFSNDKVSANKI
MTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTS
KNTRQEICNDLLHKKHVSEKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMIISLFDSTVMPDKYRH
NGK
>Mature_322_residues
PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAAYRCFSNDKVSANKIM
TPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSK
NTRQEICNDLLHKKHVSEKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNRA
TLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMIISLFDSTVMPDKYRHN
GK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36904; Mature: 36773

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW
CCCHHHHHHEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP
CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHCCCCC
KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK
CCCCCCCCEEECCEEEEECCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
HHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEECCE
ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS
EEEEECCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEC
SKVMIISLFDSTVMPDKYRHNGK
CCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW
CCHHHHHHEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP
CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHCCCCC
KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK
CCCCCCCCEEECCEEEEECCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
HHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEECCE
ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS
EEEEECCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEC
SKVMIISLFDSTVMPDKYRHNGK
CCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA