Click here to switch to the map view.

The map label for this gene is lpfC

Identifier: 30065045

GI number: 30065045

Start: 3940913

End: 3943435

Strand: Reverse

Name: lpfC

Synonym: S4048

Alternate gene names: 30065045

Gene position: 3943435-3940913 (Counterclockwise)

Preceding gene: 30065048

Following gene: 30065043

Centisome position: 85.74

GC content: 47.01

Gene sequence:

>2523_bases
ATGATGACGACCAGAATAGTGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAACCTGATGGCCGAGGTCAG
TGTATTCAATCCGGCGCTTCTGGAAATCAACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGC
CCCCAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACATTTGTTCAGGATAAT
CCAGATGCTGATCTGCACGCTTGCTTTATTGCCATTAAAAAAACACTGTCCTCCTTTGGCATAAAAGTTGATGCGCTCAA
ATCGTTCAATGATGTGGATGAGACGGTTTGCCTCGATCCTGCTCCACGTATTGAAGGCTCATCCTGGCAGTTTGACAGTG
ATAAATTGCAGCTGAATATATCCATTCACCAAATCTACATGGACGCGATGGCTTATGATTACATCAGCCCCACGCGTTGG
GATGAGGGGATTAATGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACACTACGTTCAGATTATGGTTCACAAGA
GACAGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGACCGTGGCGGCTACGTAATTACAGTACTTTAAACA
CCAGCGATGGCCGTGCGGAATACAACTCCATTAGTACCTGGATACAGCGCGATATTGCCGCGTTAAGAAGCCAGATTATG
ATTGGTGATACGTGGACGGCGAGCGATATTTTCGACAGTACGCAAATTCGCGGCGCGCGTTTGTATACTGATAACGATAT
GCTACCCGCCAGCCAGAATGGCTTTGCTCCTGTGGTTCGTGGGATTGCAAAGTCCAACGCCACCGTCATCATTCGGCAGA
ATGGCTACGTGATTTATCAGTCAGCCGTTCCACAAGGTGCTTTTGAGATCACCGATCTCAACACCGCAAGTACAGGTGGC
GATTTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTCACCCAACCTTATGCTTCATTGGCGATTCTTAA
ACGTGAAGGTCTGACAGATGTTGATGTCAGCGTGGGTGAATTGCGCGATGAAGACGGATTTACACCGGACGTCCTTCAGG
CGCAAATACTTCATGGTTTTTCCCACGGGATCACTTTATATGGAGGTATGCAGGCTGCTGAAAATTATGGTTCTGCAGCT
CTGGGTGTCGGTAAAGATCTTGGCGCTTTGGGCGCAATTTCTTTCGATGTGACACATGCTCGTGCGAATTTTAGCCATGA
TGATACAGAAACGGGTCAGTCATATCGCTTTCTCTATTCAAAACTATTTGACGACACAGACACTAGCTTGCGCCTGGTTG
GCTATCGTTACTCCACCGAGGGCTACTATACCCTCAATGAGTGGGCATCGCGGCGCAACAGCCCTGAAGACTTTTGGGAA
ACAGGTAACCGACGTAGTCGCGTGGAGGGAACGCTAACGCAGTCGTTGGGGAGAGATTATGGCAATTTATACCTGACATT
AAGCCGGCAACAATACTGGCATACCGATGATGTCGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCT
CGTGGAACGTCTCCTGGAGTTATTCCAATACTGCCAGACAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAG
CAGATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGTAATAGTTACGCCACCTATTCTGTTTCGCAAAA
CGATAATTCCGGTAGCTCACATCAACTCGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCATGGAATTTAATGC
AGTCCTATAACAGTCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCTCTTATGGCACGGTGAACGGC
AGCTATAACTACAGCCAAAATTCCCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCACACAGCGAAGGGGTAAC
GTTAAGTCAGGAGTTAGGTGAAACTATTGCTCTTGTTAAAGCACCTGGGGCCGCCGGGTTAGAAATAGATAATATGCGCG
GTGCTGCGACGGACTGGCGCGGCTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAATCGGGTAGCAATCAGCGAT
AACTATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACGCGTGGTGCAGTGGTTAAAGC
GGAGTTTGTGACTCATGTGGGTTATCGCGTTCTCTTCAGAGTGTTAAATGCAAATGGTAAACCGGTACCTTTTGGAGCCA
TTGCTGCGATACAAGATGCAAGTTTGGCAGATTCAGGAATTGTCGGTGACCGTGGCGAACTTTATCTTTCTGGTCTACCA
GAAAAAGGACAGGTTACGTTATCCTGGGGAGAAAACGCCTCAACAAAATGCATCTTCAATTATTCATTTTCGACACCAGA
AAGTGAGAGCGGATTAATTGAACAGGGTGTGACATGTCATTAA

Upstream 100 bases:

>100_bases
TTAAATAAGTGATACTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGTGACCCGATAAAAATGACGCTGTAAGCAA
GGGATAAGGATAGGCGTATT

Downstream 100 bases:

>100_bases
AAGGATTTTTATGAACAAGTATATCAAACAGTGGTGCTTTGCTGTGTTTATGCTCTCGTTAAGTAGTGTAGCACTTGCAG
CTCCTAAAGGTATCTGTACC

Product: putative long polar fimbriae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 840; Mature: 840

Protein sequence:

>840_residues
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN
PDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRW
DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG
DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAA
LGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE
QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNG
SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP
EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH

Sequences:

>Translated_840_residues
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN
PDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRW
DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG
DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAA
LGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE
QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNG
SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP
EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
>Mature_840_residues
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN
PDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRW
DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG
DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAA
LGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE
QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNG
SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP
EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=872, Percent_Identity=39.2201834862385, Blast_Score=608, Evalue=1e-175,
Organism=Escherichia coli, GI1790772, Length=868, Percent_Identity=38.9400921658986, Blast_Score=590, Evalue=1e-169,
Organism=Escherichia coli, GI1786744, Length=873, Percent_Identity=36.7697594501718, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI1789533, Length=844, Percent_Identity=38.7440758293839, Blast_Score=530, Evalue=1e-151,
Organism=Escherichia coli, GI1786332, Length=872, Percent_Identity=32.9128440366972, Blast_Score=407, Evalue=1e-114,
Organism=Escherichia coli, GI1788427, Length=806, Percent_Identity=30.272952853598, Blast_Score=346, Evalue=4e-96,
Organism=Escherichia coli, GI87081778, Length=854, Percent_Identity=27.751756440281, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1789610, Length=749, Percent_Identity=24.0320427236315, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92823; Mature: 92823

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
CCCEEEEEEECCCEEEEEECCHHEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCCCEEE
DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
EEEECCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEHHHCCCCCCCEEECCC
APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
CCCCCCCCEEECCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHH
SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
HCCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEE
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
ECCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEE
SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
CCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCHHHHHHHHHHCCCCCCCCCHHH
LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
CCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEEEEEE
RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
ECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEHHHHHHCCCCCHHHHH
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEE
YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
ECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCCC
TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
CEEECCCCCEEEHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCEEECCCCCCEE
AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
EECCCCEEHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
CCCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCC
SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCC
>Mature Secondary Structure
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
CCCEEEEEEECCCEEEEEECCHHEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCCCEEE
DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
EEEECCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEHHHCCCCCCCEEECCC
APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
CCCCCCCCEEECCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHH
SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
HCCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEE
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
ECCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEE
SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
CCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCHHHHHHHHHHCCCCCCCCCHHH
LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
CCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEEEEEE
RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
ECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEHHHHHHCCCCCHHHHH
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEE
YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
ECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCCC
TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
CEEECCCCCEEEHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCEEECCCCCCEE
AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
EECCCCEEHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
CCCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCC
SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]