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The map label for this gene is rhaS

Identifier: 30064801

GI number: 30064801

Start: 3660999

End: 3661835

Strand: Reverse

Name: rhaS

Synonym: S3766

Alternate gene names: 30064801

Gene position: 3661835-3660999 (Counterclockwise)

Preceding gene: 30064812

Following gene: 30064800

Centisome position: 79.62

GC content: 51.73

Gene sequence:

>837_bases
ATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTTGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGA
TTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAACATGGCACGGGTATTCATGTGTTTAATGGGCAGC
CCTATACCATCACCGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGT
CTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGA
TGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAACAGC
AGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGC
AGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGA
GGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGAC
TGACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTACTACGCCACAGCGAGGCCAGCGTCACT
GACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCG
TGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAA

Upstream 100 bases:

>100_bases
AAAATCGACGTTTTTTACGTGGTTTTCCGTCGAAAATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTT
GACGACATCAGGAGGCCAGT

Downstream 100 bases:

>100_bases
CGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCTCTGGCCGAGGTAGCCACGGTGGCGC
ATCAGTTAAAACTTCTCAAA

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLC
LTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ

Sequences:

>Translated_278_residues
MTVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLC
LTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
>Mature_277_residues
TVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCL
TNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSS
LQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTD
IAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=278, Percent_Identity=99.6402877697842, Blast_Score=570, Evalue=1e-164,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=35.7142857142857, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1788725, Length=164, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32362; Mature: 32231

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGG
CCEEECCCCCCCCCCCEEECCCCCCCCCCHHHCCCEEEEEEECCCEEEEECCCCEEEECC
TVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCHHH
LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
TVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGG
CEEECCCCCCCCCCCEEECCCCCCCCCCHHHCCCEEEEEEECCCEEEEECCCCEEEECC
TVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCHHH
LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA