Click here to switch to the map view.

The map label for this gene is fdhD

Identifier: 30064812

GI number: 30064812

Start: 3670960

End: 3671793

Strand: Reverse

Name: fdhD

Synonym: S3777

Alternate gene names: 30064812

Gene position: 3671793-3670960 (Counterclockwise)

Preceding gene: 30064817

Following gene: 30064801

Centisome position: 79.83

GC content: 53.12

Gene sequence:

>834_bases
GTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATGGCGGCGTGA
TGATTTACAACACCCACGGTTAGATGAGGTCGCGGAAGAAGTTCCCGTTGCGCTGGTCTACAACGGCATTTCGCATGTGG
TGATGATGGCGTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATAATAGAAAGTCCGCGC
GATATCTTCGGCATGGATGTCGTTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGG
GTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTACGGGCTGTGGCGTATGCGGCGTGGAGCAACTTAATGACATCGGAA
AACCGGTGCAGCCGCTACCGTTCACCCAGACGTTTGATCTCAACAAACTGGATGATGCATTACGTCATCTCAACGATTTT
CAGCCAGTGGGGCGACTGACTGGTTGTACTCACGCCGCTGCCTGGATGTTGCCATCTGGCGAACTGGTCGGCGGGCATGA
AGACGTGGGTCGCCATGTGGCGCTGGACAAACTGTTAGGCCGCCGGTCACAAGAAGGGGAAAGCTGGCAGCAAGGTGCGG
TACTGGTTTCCAGTCGTGCCAGTTATGAAATGGTGCAAAAGTCGGCGATGTGCGGCGTAGAGATTTTGTTTGCGGTGTCT
GCCGCGACCACGCTTGCTGTAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAAC
GGTTTATACCCATCCGCAGCGTTTGAGCAATTAA

Upstream 100 bases:

>100_bases
CGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCTAGGAAGGGTTTGTAACAGAATACCATAATGTTGGTGTGTATGT
TCTTATCTGGTTAAGAGAAA

Downstream 100 bases:

>100_bases
TTAAAATAAGTCCTGCGATATATATTAAATTGCAGGACTTATTCATTTCGTGAATTGGTAATGACTCCAACTTACTGATA
GTGTTTTATGTTCAGATAAT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPR
DIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
QPVGRLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN

Sequences:

>Translated_277_residues
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPR
DIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
QPVGRLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
>Mature_277_residues
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPR
DIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
QPVGRLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=277, Percent_Identity=99.6389891696751, Blast_Score=572, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30588; Mature: 30588

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPK
CCCHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHCCCCEEECCHHHEEEEECCC
DLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTG
CCEEEEECCHHHCHHHCCCHHHCCCCCCCCCCCEEEEEEECCCHHCCHHHHHHHHCCCCC
CGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGRLTGCTHAAAWMLPSG
CCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCC
ELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
CEECCHHHHHHHHHHHHHHCCCCCCCCCHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
HHHHHHHHHHHHCCEEEEEECCCCCEEEEECHHHHCC
>Mature Secondary Structure
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPK
CCCHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHCCCCEEECCHHHEEEEECCC
DLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTG
CCEEEEECCHHHCHHHCCCHHHCCCCCCCCCCCEEEEEEECCCHHCCHHHHHHHHCCCCC
CGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGRLTGCTHAAAWMLPSG
CCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCC
ELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
CEECCHHHHHHHHHHHHHHCCCCCCCCCHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
HHHHHHHHHHHHCCEEEEEECCCCCEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA