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The map label for this gene is yraM

Identifier: 30064487

GI number: 30064487

Start: 3276723

End: 3278759

Strand: Direct

Name: yraM

Synonym: S3405

Alternate gene names: 30064487

Gene position: 3276723-3278759 (Clockwise)

Preceding gene: 30064485

Following gene: 30064488

Centisome position: 71.24

GC content: 54.34

Gene sequence:

>2037_bases
ATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGCCGGTTG
TGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGA
TGCAGCAAAGCTCTGATGATACCAGGATCAACTGGCAATTACTCGCCATTCGTGCACTGGTGAAAGAAGGTAAAACCGGG
CAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATTCTCAGCGTCGCGAGAAAACACTGCTGGCGGCAGA
GATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACC
AGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCT
CAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGA
ACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATA
ACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATG
CTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCGCTGAATGG
CCAGGCAGCGGTATTTGGTCGCACTATTCAGCAAGGCTTTGAAGCCGCGAAAAATATCGGCACTCAGCCAGTGGCGGCTC
AGGTAGCTGCCGCACCTGCCGCAGACGTAGCAGAACAACCTCAGCCGCAAACTGCGGATAGCGTTGCCAGCCCGGCACAA
GCCTCGGTTAGCGATCTGACCGGTGATCAGCCTGCGGCCCAGCCGGTGCCTGTAAGCGCCCCGGCGACAAGCACCGCAGC
GGTAAGCGCACCCGCAAATCCATCCGCAGAGCTGAAAATCTACGATACCTCATCACAACCACTTAGCCAGATCTTAAGCC
AGGTTCAGCAGGATGGCGCGAGTATTGTGGTTGGTCCGTTGCTGAAAAATAACGTTGAAGAGTTGCTGAAGAGCAACACC
CCGCTGAACGTACTGGCACTGAACCAGCCGGAGAATATCGAAAACCGCGTCAATATTTGTTACTTCGCGCTTTCACCGGA
AGACGAAGCGCGCGATGCAGCGCGTCATATTCGTGACCAGGGTAAACAAGCGCCGCTGGTGCTGATCCCACGCAGTGCAT
TGGGCGATCGCGTAGCCAATGCGTTTGCGCAAGAGTGGCAGAAACTGGGCGGCGGCACCGTTCTGCAACAAAAATTTGGT
TCCACCAGCGAATTACGCGCGGGTGTTAACGGCGGTTCTGGTATTGCTTTAACGGGTAGCCCGATTACTCCCAGAGCGAC
AACCGACTCCGGCATGACGACCAACAATCCAACGCTGCAAACCACGCCAACCGATGACCAGTTCACCAATAATGGCGGTC
GTGTCGATGCGGTCTACATTGTGGCAACGCCGGGTGAAATCGCTTTTATCAAACCGATGATCGCCATGCGTAACGGTAGC
CAGAGCGGTGCAACGCTGTACGCCAGTTCCCGCAGCGCACAAGGCACCGCAGGCCCGGATTTCCGACTGGAGATGGAAGG
CTTGCAGTACAGCGAAATCCCGATGCTGGCAGGCGGTAATCTGCCGTTAATGCAGCAGGCGCTCAGCGCGGTGAACAACG
ATTATTCGCTGGCTCGCATGTATGCGATGGGCGTTGATGCCTGGTCGTTGGCAAATCATTTCTCACAAATGCGCCAGGTT
CAGGGTTTTGAAATCAACGGTAATACCGGAAGTCTGACGGCTAACCCGGATTGCGTGATTAACAGGAAGTTATCATGGCT
ACAGTACCAACAAGGTCAGGTAGTCCCCGCCAGTTAA

Upstream 100 bases:

>100_bases
GCCCTGAGAATTATCCGCCGATTGGTGTTGTTTCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAA
AAAATATCACTGGATACATT

Downstream 100 bases:

>100_bases
CCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCT
AACGTGAACGAGCGTGGCGG

Product: putative glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAAEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADSVASPAQ
ASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNT
PLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSALGDRVANAFAQEWQKLGGGTVLQQKFG
STSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGS
QSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQV
QGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS

Sequences:

>Translated_678_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAAEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADSVASPAQ
ASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNT
PLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSALGDRVANAFAQEWQKLGGGTVLQQKFG
STSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGS
QSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQV
QGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>Mature_678_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAAEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADSVASPAQ
ASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNT
PLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSALGDRVANAFAQEWQKLGGGTVLQQKFG
STSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGS
QSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQV
QGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1655 [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=678, Percent_Identity=98.6725663716814, Blast_Score=1359, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 72756; Mature: 72756

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCC
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAAEIKLAQKDFAGAQN
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQA
HHHHCCCHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHCHHHHHHH
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPA
CCHHHEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
ADVAEQPQPQTADSVASPAQASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKI
HHHHCCCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
YDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNIC
EECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
YFALSPEDEARDAARHIRDQGKQAPLVLIPRSALGDRVANAFAQEWQKLGGGTVLQQKFG
EEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
STSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYI
CHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEE
VATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGN
EECCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
LPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVI
CHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEECCCCEEE
NRKLSWLQYQQGQVVPAS
ECCHHHHHHCCCEEECCC
>Mature Secondary Structure
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCC
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAAEIKLAQKDFAGAQN
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQA
HHHHCCCHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHCHHHHHHH
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPA
CCHHHEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
ADVAEQPQPQTADSVASPAQASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKI
HHHHCCCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
YDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNIC
EECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
YFALSPEDEARDAARHIRDQGKQAPLVLIPRSALGDRVANAFAQEWQKLGGGTVLQQKFG
EEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
STSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYI
CHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEE
VATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGN
EECCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
LPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVI
CHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEECCCCEEE
NRKLSWLQYQQGQVVPAS
ECCHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]