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The map label for this gene is yraI

Identifier: 30064482

GI number: 30064482

Start: 3270079

End: 3270774

Strand: Direct

Name: yraI

Synonym: S3397

Alternate gene names: 30064482

Gene position: 3270079-3270774 (Clockwise)

Preceding gene: 30064479

Following gene: 30064485

Centisome position: 71.1

GC content: 44.83

Gene sequence:

>696_bases
ATGTCAAAACGAACATTCGCGGTGATATTAACCTTGTTGTGTAGCTTCTGTATCGGCCAGGCGCTTGCAGGGGGTATCGT
TTTACAGCGAACGCGAGTGATCTATGATGCCAGCCGCAAAGAGGCTGCGTTACCTGTCGCAAACAAAGGCGCAGAAACGC
CTTATTTACTGCAATCATGGGTAGATAATATAGATGGTAAAAGCCGTGCCCCATTTATTATAACCCCACCGCTATTTCGT
CTTGAGGCTAGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTA
CATTAATGTTCGTGCCATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACGC
GGGTCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAATTTAAACGTAGT
GACCATTCACTCAATATATATAACCCAACTGAATATTACGTCGTATTTGCCGGACTGGCAGTCGATAAAACCGATCTCAC
AAGCAAAATTGAATATATCGCGCCCGGAGAACATAAACAGTTACCACTTCCAGCATCTGGCGGAAAGAACGTGAAATGGG
CTGCGATCAACGATTATGGCGGCAGTTCCGGGACAGAAACTCGTCCACTGCAATAA

Upstream 100 bases:

>100_bases
GTAACGCTGGATTACCGTTAATACGTTACGGCGTTATCTGACCTTTCAGATAACGCCCTTTTCCTTCCTCTTTCTCGTTG
TATCAGGTTGAAAAATAACT

Downstream 100 bases:

>100_bases
AAAATATAAAAACACAGGCCATCAGGGAATGCCACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCGC
TCATTATCAAACGTTGTTTG

Product: putative chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFR
LEASDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRS
DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Sequences:

>Translated_231_residues
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFR
LEASDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRS
DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>Mature_230_residues
SKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRL
EASDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRSD
HSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Specific function: Could be required for the biogenesis of the putative yraH fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=231, Percent_Identity=99.1341991341991, Blast_Score=474, Evalue=1e-135,
Organism=Escherichia coli, GI1790771, Length=217, Percent_Identity=39.1705069124424, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1786743, Length=220, Percent_Identity=35, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1787171, Length=219, Percent_Identity=33.7899543378995, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786333, Length=230, Percent_Identity=33.4782608695652, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788428, Length=217, Percent_Identity=30.8755760368664, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786936, Length=199, Percent_Identity=31.6582914572864, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788677, Length=159, Percent_Identity=32.7044025157233, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082203, Length=224, Percent_Identity=29.4642857142857, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081806, Length=234, Percent_Identity=27.3504273504274, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25693; Mature: 25562

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW
CCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
VDNIDGKSRAPFIITPPLFRLEASDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD
HHCCCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
DVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLA
CCCCCEEEEEEEEEHHHEECCCCCCCCCCHHHHCCEEECCCCEEEEECCCEEEEEEEECE
VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
ECCHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW
CCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
VDNIDGKSRAPFIITPPLFRLEASDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD
HHCCCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
DVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLA
CCCCCEEEEEEEEEHHHEECCCCCCCCCCHHHHCCEEECCCCEEEEECCCEEEEEEEECE
VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
ECCHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]