Click here to switch to the map view.

The map label for this gene is yeeS

Identifier: 30064313

GI number: 30064313

Start: 3086638

End: 3087129

Strand: Direct

Name: yeeS

Synonym: S3201

Alternate gene names: 30064313

Gene position: 3086638-3087129 (Clockwise)

Preceding gene: 30064312

Following gene: 30064314

Centisome position: 67.11

GC content: 58.33

Gene sequence:

>492_bases
ATGGTGGCAGGGACAATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGC
CCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTC
TGAACATGGCGGGACTGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACC
CTCTTCACCGGCACCATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGC
CGTGGTGCTGGCGCACAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTAC
AGGCACTGGCCCTGGTTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACAC
GGTCTGCTTTAA

Upstream 100 bases:

>100_bases
TCGTACGGAGTGTTATGCCATGACGGTCCATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCA
TTATGCGCATCATCGACTGA

Downstream 100 bases:

>100_bases
CCCGTCACCGTCACAATCACCTTCATATCACTTCAGTTTCTCTTTCTCAGCTGTTTCTTACTTTCACATTCAGGAGGACT
ATTCTCATGAAAATCATCAC

Product: RADC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGET
LFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEH
GLL

Sequences:

>Translated_163_residues
MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGET
LFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEH
GLL
>Mature_163_residues
MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGET
LFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEH
GLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788312, Length=148, Percent_Identity=95.2702702702703, Blast_Score=283, Evalue=6e-78,
Organism=Escherichia coli, GI2367100, Length=158, Percent_Identity=81.0126582278481, Blast_Score=266, Evalue=3e-73,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=77.1428571428572, Blast_Score=226, Evalue=6e-61,
Organism=Escherichia coli, GI87082300, Length=120, Percent_Identity=48.3333333333333, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18200; Mature: 18200

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLE
CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHEEEEECCCCC
REEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVP
CCCEEEEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLE
CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHEEEEECCCCC
REEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVP
CCCEEEEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]