Click here to switch to the map view.

The map label for this gene is ygcQ

Identifier: 30064117

GI number: 30064117

Start: 2853646

End: 2854539

Strand: Reverse

Name: ygcQ

Synonym: S2978

Alternate gene names: 30064117

Gene position: 2854539-2853646 (Counterclockwise)

Preceding gene: 30064118

Following gene: 30064113

Centisome position: 62.06

GC content: 54.81

Gene sequence:

>894_bases
ATGGCAGGACTATTTACGCCAAAGGATGCAGCCATGAATATCGCAATTGTGACAATAAATCAGGAGAATGCCGCAATAGC
GAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTGTACGCTGGCGCACTGGCAAATAGAACCTCAGCCCGTAGTGGCGGAAC
AGGTGCTGGATGCGATGGTGGAACAGTGGCAGCGAACGCCTGCGGACGTTGTTCTCTTTCCGCCGGGAACGTTTGGCGAT
GAACTGTCGACCCGGCTGGCCTGGCGTTTACATGGTGCAAGCATCTGTCAGGTGACTTCGTTAGATATTCCAACCGTAAG
CATGCGCAAATCCCACTGGGGAAATGCGTTAACGGCGACGCTGCAAACAGAAAAACGCCCGTTATGCCTTTCCCTGGCGC
GTCAGGCGGGAGCAGCGAAAAACGCCACGTTGCCCTCTGGAATGCAGCAACTGAACATTGTCCCAGGTGCGCTTCCCGAC
TGGCTGGTTAGCACAGAGGATCTGAAAAATGTTAGCCGCGACCCATTAGCTGAGGCCAGACGGGTGCTGGTGGTGGGACA
GGGCGGAGAGGCAGATAACCAGGAAATCGTTATGCTGGCAGAAAAGCTGGGAGCCGAAGTGGGCTACAGTCGGGCGCGAG
TGATGAACGGTGGCGTTGATGCTGAAAAAGTGATTGGTATTTCCGGACATCTGCTGGCACCTGAGGTGTGCATTGTTGTT
GGCGCTTCCGGCGCAGCAGCGTTAATGGCGGGCGTACGCAATAGCAAGTTTATGGTGGCGATTAATCATGACGCCAGCGC
AGCGGTATTTTCACAGGCAGATATTGGCGTGGTTGATGACTGGAAAGTGGTGCTGGAGGCACTGGTGACAAACATTCACG
CAGAATACCAATAA

Upstream 100 bases:

>100_bases
AAATGCCAGCGATGCAGTGTCTGCAACTGGCAAGAGCAGAGCAACGACGCGGAGCGACGCTGATTGATGGGCAAACGGTA
GCAGAAAAAGCTCAAAAGCT

Downstream 100 bases:

>100_bases
CGTGCTGCCGGATGATCCTGCCTACGGTTCTGGACTGGGGACCTGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCAGG
CGCTGAATGTCGGATGTGGC

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMVEQWQRTPADVVLFPPGTFGD
ELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPD
WLVSTEDLKNVSRDPLAEARRVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVV
GASGAAALMAGVRNSKFMVAINHDASAAVFSQADIGVVDDWKVVLEALVTNIHAEYQ

Sequences:

>Translated_297_residues
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMVEQWQRTPADVVLFPPGTFGD
ELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPD
WLVSTEDLKNVSRDPLAEARRVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVV
GASGAAALMAGVRNSKFMVAINHDASAAVFSQADIGVVDDWKVVLEALVTNIHAEYQ
>Mature_296_residues
AGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMVEQWQRTPADVVLFPPGTFGDE
LSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDW
LVSTEDLKNVSRDPLAEARRVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVG
ASGAAALMAGVRNSKFMVAINHDASAAVFSQADIGVVDDWKVVLEALVTNIHAEYQ

Specific function: May play a role in a redox process [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI189181759, Length=214, Percent_Identity=34.1121495327103, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI4503607, Length=214, Percent_Identity=34.1121495327103, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082157, Length=286, Percent_Identity=97.2027972027972, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI1787990, Length=237, Percent_Identity=30.379746835443, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786226, Length=270, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17506929, Length=218, Percent_Identity=33.9449541284404, Blast_Score=89, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6325261, Length=219, Percent_Identity=31.0502283105023, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17136898, Length=220, Percent_Identity=32.2727272727273, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24652801, Length=220, Percent_Identity=32.2727272727273, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 31596; Mature: 31464

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMV
CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
EQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTAT
HHHHCCCCCEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCHHHHCCCCCEEEEE
LQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVSRDPLAEAR
EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCHHHHCCCCCCHHHCC
RVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVV
EEEEEECCCCCCCCCEEEEHHHHCHHCCCCHHEEECCCCCHHHEEECCCCEECCEEEEEE
GASGAAALMAGVRNSKFMVAINHDASAAVFSQADIGVVDDWKVVLEALVTNIHAEYQ
ECCCHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMV
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
EQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTAT
HHHHCCCCCEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCHHHHCCCCCEEEEE
LQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVSRDPLAEAR
EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCHHHHCCCCCCHHHCC
RVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVV
EEEEEECCCCCCCCCEEEEHHHHCHHCCCCHHEEECCCCCHHHEEECCCCEECCEEEEEE
GASGAAALMAGVRNSKFMVAINHDASAAVFSQADIGVVDDWKVVLEALVTNIHAEYQ
ECCCHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]