Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yfiP
Identifier: 30063984
GI number: 30063984
Start: 2709684
End: 2710406
Strand: Direct
Name: yfiP
Synonym: S2818
Alternate gene names: 30063984
Gene position: 2709684-2710406 (Clockwise)
Preceding gene: 30063983
Following gene: 30063985
Centisome position: 58.91
GC content: 52.01
Gene sequence:
>723_bases ATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACG TCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTGCCAACGCTGTCTTTTGCCAGAGAAATTATGTCTCTGTTCGACAA TTACCCCAGCACAAGCAAAAAGTCGCTTCTGTTTGCTGATGTTCGACACCGAGCCAATGAAGCCCAGTAATACCGGGCGT CTGATTGCTGATATTTTGCCTGATACCGTTGCGTTTCAATGGTCGCGTACCGAACCCTCGCAGGATTTGCTGGATCTGGT ACAAAACCCGGATTATCAGCCAATGGTGGTCTTTCCCGCCTCGTATGCTGATGAGCAACGGGAAGTGATCTTCACACCAC CTGCCGGTAAGCCACCGCTGTTTATCATGCTCGATGGTACCTGGCCGGAAGCTCGCAAGATGTTTCGTAAAAGTCCGTAT CTGGATAATCTTCCCGTCATTTCCGTCGATCTTTCCCGGCTTTCTGCCTATCGCCTGCGTGAAGCCCAGGCTGCAGGCCA ATATTGTACTGCCGAGGTAGCCATCGCACTGTTAGATATGGCCGGCGATACCGGGGCGGCAGCAGGGTTAGGCGAGCATT TTACCCGCTTTAAAACACGCTATCTGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTT TAA
Upstream 100 bases:
>100_bases TTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCC CCGTTTTCTCCTCTGCGACA
Downstream 100 bases:
>100_bases AATCATTCGGTCACTTCTGCGGGAGACCGGTATGAGTCAGCGAGGACTGGAAGCACTACTGCGACCAAAATCGATAGCGG TAATTGGCGCGTCGATGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MAFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGR LIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPY LDNLPVISVDLSRLSAYRLREAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV
Sequences:
>Translated_240_residues MAFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGR LIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPY LDNLPVISVDLSRLSAYRLREAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV >Mature_239_residues AFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRL IADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYL DNLPVISVDLSRLSAYRLREAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV
Specific function: Unknown
COG id: COG3148
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTW family [H]
Homologues:
Organism=Escherichia coli, GI87082133, Length=232, Percent_Identity=99.1379310344828, Blast_Score=475, Evalue=1e-136,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005636 [H]
Pfam domain/function: PF03942 DTW [H]
EC number: NA
Molecular weight: Translated: 26932; Mature: 26801
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCC SRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPA CCEEEEEECCCCCCCCCCCCCHHHHCCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEECC SYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLR CCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHH EAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure AFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCC SRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNPDYQPMVVFPA CCEEEEEECCCCCCCCCCCCCHHHHCCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEECC SYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLR CCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHH EAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]