Click here to switch to the map view.

The map label for this gene is rfbD

Identifier: 30063491

GI number: 30063491

Start: 2099571

End: 2100470

Strand: Reverse

Name: rfbD

Synonym: S2226

Alternate gene names: 30063491

Gene position: 2100470-2099571 (Counterclockwise)

Preceding gene: 30063492

Following gene: 30063490

Centisome position: 45.67

GC content: 49.22

Gene sequence:

>900_bases
ATGAATATCCTGCTTTTCGGCAAAACAGGGCAGGTGGGTTGGGAACTGCAGCGTGCTCTGGCTCCTCTGGGTAACTTGAT
TGCGCTCGATGTTCACTCCACTGATTATTGTGGAGATTTCAGCAACCCCGAAGGTGTGGCTGAAACCGTCAAAAAAATTC
GCCCCGATGTTATTGTTAATGCTGCTGCTCACACTGCAGTAGACAAAGCGGAATCAGAACCGAATTTCGCGCAATTACTT
AACGCGACATGCGTCGAAGCGATTGCAAAAGCAGCTAATGAAGTCGGAGCCTGGGTTATACACTACTCCACTGATTATGT
TTTCCCAGGCAACGGTGACACGCCATGGCTGGAAACGGATGCAACAGCACCGCTAAATGTCTACGGTGAAACCAAGCTAG
CTGGGGAAAAAGCGTTACAAGAACATTGCGCAAAGCATCTTATTTTCCGTACCAGCTGGGTATACGCTGGTAAAGGAAAT
AACTTTGCCAAAACGATGTTGCGCCTGGCAAAAGAACGCGAAGAGTTGGCTGTAATAAACGATCAATTCGGCGCACCAAC
GGGGGCTGAATTACTGGCTGATTGCACCGCTCATGCCATTCGCGTGGCCGCAAATAAACCAGAAGTTGCTGGTTTGTACC
ATCTGGTTGCTGGTGGTACAACAACCTGGCACGATTATGCCGCTCTGGTATTTGAAGAAGCGCGCAGAGCGGGGATCAAC
CTTGCTCTTAACAAACTTAATGCCGTGCCGACAACGGCCTATCCCACACCAGCACGTCGTCCCCATAATTCTCGCCTCAA
TACCGAAAAATTTCAGCAGAACTTTGCGCTTGTCTTGCCTGACTGGCAGGTGGGCGTGAAACGTATGCTCAACGAATTAT
TTACGACCACGGCAATTTAA

Upstream 100 bases:

>100_bases
AAACGGTGGAATGGTATCTGGCTAATACAAATTGGGTTGAGAATGTGAAAAGCGGTACTTATCAGTCGTGGATTGAACAA
AACTATGAGGGCCGTCAGTA

Downstream 100 bases:

>100_bases
CAAATTATTGCATCTCGCTCATGATGCTAGAGCGAGATGAATTAAAAGGAATGGTGAAATGAAAACGCGTAAAGGTATTA
TTCTGGCTGGTGGTTCCGGC

Product: dTDP-4-dehydrorhamnose reductase

Products: NA

Alternate protein names: dTDP-4-keto-L-rhamnose reductase; dTDP-6-deoxy-L-lyxo-4-hexulose reductase; dTDP-6-deoxy-L-mannose dehydrogenase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLL
NATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAGGTTTWHDYAALVFEEARRAGIN
LALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKRMLNELFTTTAI

Sequences:

>Translated_299_residues
MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLL
NATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAGGTTTWHDYAALVFEEARRAGIN
LALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKRMLNELFTTTAI
>Mature_299_residues
MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLL
NATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAGGTTTWHDYAALVFEEARRAGIN
LALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKRMLNELFTTTAI

Specific function: Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well [H]

COG id: COG1091

COG function: function code M; dTDP-4-dehydrorhamnose reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose reductase family [H]

Homologues:

Organism=Homo sapiens, GI33519455, Length=252, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI11034825, Length=251, Percent_Identity=27.8884462151394, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI1788352, Length=299, Percent_Identity=94.9832775919732, Blast_Score=590, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005913
- InterPro:   IPR016040 [H]

Pfam domain/function: PF04321 RmlD_sub_bind [H]

EC number: =1.1.1.133 [H]

Molecular weight: Translated: 32565; Mature: 32565

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVKKIRPDVIVN
CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEE
AAAHTAVDKAESEPNFAQLLNATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETD
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCEEECCCCCCCCEECC
ATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGNNFAKTMLRLAKEREELAVIN
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHEEEC
DQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAGGTTTWHDYAALVFEEARRAGIN
CCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH
LALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKRMLNELFTTTAI
HEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVKKIRPDVIVN
CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEE
AAAHTAVDKAESEPNFAQLLNATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETD
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCEEECCCCCCCCEECC
ATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGNNFAKTMLRLAKEREELAVIN
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHEEEC
DQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAGGTTTWHDYAALVFEEARRAGIN
CCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH
LALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGVKRMLNELFTTTAI
HEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7559340 [H]