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The map label for this gene is rfc

Identifier: 30063485

GI number: 30063485

Start: 2093827

End: 2094975

Strand: Reverse

Name: rfc

Synonym: S2219

Alternate gene names: 30063485

Gene position: 2094975-2093827 (Counterclockwise)

Preceding gene: 30063486

Following gene: 30063484

Centisome position: 45.55

GC content: 27.33

Gene sequence:

>1149_bases
ATGAATAATATAAATAAAATTTTTATAACATTTTTATGTATTGAACTGATTATTGGTGGTGGTGGAAGATTACTGGAGCC
ATTGGGAATATTCCCTTTGCGATATTTATTATTTGTATTTAGTTTTATACTTTTAATTTTTAATTTAGTTACATTCAATT
TTTCAATCACCCAAAAATGTGTCAGTCTTTTTATATGGTTGCTTTTATTTCCTTTTTATGGCTTCTTTGTCGGCTTATTA
GCTGGTAATAAAATAAATGATATACTGTTTGATGTGCAACCATACCTTTTTATGCTGTCACTTATATATCTATTTACACT
AAGATATACTTTAAAAGTATTTTCATGTGAGATTTTTATTAAAATAGTTAATGCATTTGCATTATATGGATCACTGTTAT
ATATTTCATACATAATTTTGTTGAATTTCGGTTTGTTAAATTTTAATTTAATTTATGAACACTTATCATTGACTAGCGAG
TTCTTTTTTCGTCCCGATGGGGCTTTTTTTTCCAAATCCTTCTACTTTTTTGGTGTCGGTGCGATTATCAGTTTTGTCGA
CAAAAAATATTTAAAATGTCTCATAATAGTGCTTGCGATATTATTGACAGAATCAAGAGGTGTATTACTTTTTACAACAT
TATCACTGTTATTAGCCAGTTTTAAATTACATAAGCTATATTTAAATACTATTATAATAATATTGGGCAGCGTTCTATTT
ATAATTATGCTTTACATGGTCGGATCACGCAGTGAAGATTCTGACTCTGTTAGATTTAATGATTTATATTTTTATTATAA
AAATGTTGATTTAGCGACGTTCTTGTTTGGAAGAGGATTTGGTTCATTTATATTAGATCGATTAAGGATTGAAATAGTAC
CTCTTGAGATACTTCAGAAAACAGGCGTTATTGGTGTATTTATATCATTAGTTCCTATGTTGCTTATCTTTTTGAAAGGC
TATTTTTTAAATAGTACAAAAACATCATTAATGATGTCGTTAATACTTTTTTTCAGTATTACCGTTTCTATAACTAATCC
ATTTCTTTTTACACCCATGGGAATTTTTATTATAGGCGTTGTAGTTTTATGGGTATTTTCTATAGAAAATATCCAAATTA
GTAATAACCTCACTTCTGGAGCAAAATAA

Upstream 100 bases:

>100_bases
GCTTTAAGTTTTTGGAAGTTAAGGCGGAAAAAGGCTGATAAAATTTATATTTTATTAATGTTGATTTTAAACATATTTTA
AAAAACATCACCTTACGAAT

Downstream 100 bases:

>100_bases
AGGATGTTAAAAATAGGGAAGTTATTGACCAGTTCTTTTTTTAGTTATTTTTTAATTGGAATTGTCAATACTGCTTTACA
TTGGGGGGTATTTTATGCGT

Product: O-antigen polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFILLIFNLVTFNFSITQKCVSLFIWLLLFPFYGFFVGLL
AGNKINDILFDVQPYLFMLSLIYLFTLRYTLKVFSCEIFIKIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSE
FFFRPDGAFFSKSFYFFGVGAIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLLASFKLHKLYLNTIIIILGSVLF
IIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLFGRGFGSFILDRLRIEIVPLEILQKTGVIGVFISLVPMLLIFLKG
YFLNSTKTSLMMSLILFFSITVSITNPFLFTPMGIFIIGVVVLWVFSIENIQISNNLTSGAK

Sequences:

>Translated_382_residues
MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFILLIFNLVTFNFSITQKCVSLFIWLLLFPFYGFFVGLL
AGNKINDILFDVQPYLFMLSLIYLFTLRYTLKVFSCEIFIKIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSE
FFFRPDGAFFSKSFYFFGVGAIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLLASFKLHKLYLNTIIIILGSVLF
IIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLFGRGFGSFILDRLRIEIVPLEILQKTGVIGVFISLVPMLLIFLKG
YFLNSTKTSLMMSLILFFSITVSITNPFLFTPMGIFIIGVVVLWVFSIENIQISNNLTSGAK
>Mature_382_residues
MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFILLIFNLVTFNFSITQKCVSLFIWLLLFPFYGFFVGLL
AGNKINDILFDVQPYLFMLSLIYLFTLRYTLKVFSCEIFIKIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSE
FFFRPDGAFFSKSFYFFGVGAIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLLASFKLHKLYLNTIIIILGSVLF
IIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLFGRGFGSFILDRLRIEIVPLEILQKTGVIGVFISLVPMLLIFLKG
YFLNSTKTSLMMSLILFFSITVSITNPFLFTPMGIFIIGVVVLWVFSIENIQISNNLTSGAK

Specific function: May link the O-antigen tetrasaccharide units into long chains, giving rise to typical smooth LPS

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RFC_SHIFL (P37784)

Other databases:

- EMBL:   X71970
- EMBL:   AE005674
- EMBL:   AE014073
- PIR:   C36966
- RefSeq:   NP_707929.1
- RefSeq:   NP_837656.1
- EnsemblBacteria:   EBESCT00000087320
- EnsemblBacteria:   EBESCT00000091744
- GeneID:   1025297
- GeneID:   1078521
- GenomeReviews:   AE005674_GR
- GenomeReviews:   AE014073_GR
- KEGG:   sfl:SF2097
- KEGG:   sfx:S2219
- GeneTree:   EBGT00050000014531
- HOGENOM:   HBG210169
- ProtClustDB:   CLSK573264
- BioCyc:   SFLE198214:AAN43636.1-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43724; Mature: 43724

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12ad4994)-; HASH(0x12f3eb40)-; HASH(0x130663f4)-; HASH(0x137de588)-; HASH(0x12edf62c)-; HASH(0x1358c278)-; HASH(0x134d3368)-; HASH(0x137dc3f0)-; HASH(0xfa1939c)-; HASH(0x1311418c)-; HASH(0x135a6fe0)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFILLIFNLVTFNFSITQKC
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VSLFIWLLLFPFYGFFVGLLAGNKINDILFDVQPYLFMLSLIYLFTLRYTLKVFSCEIFI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSEFFFRPDGAFFSKSFYFFGVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLLASFKLHKLYLNTIIIILGSVLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLFGRGFGSFILDRLRIEIVPLEILQK
HHHHHHHCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHEEEHHHHHHH
TGVIGVFISLVPMLLIFLKGYFLNSTKTSLMMSLILFFSITVSITNPFLFTPMGIFIIGV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VVLWVFSIENIQISNNLTSGAK
HHHHHHHHCCEEEECCCCCCCH
>Mature Secondary Structure
MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFILLIFNLVTFNFSITQKC
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VSLFIWLLLFPFYGFFVGLLAGNKINDILFDVQPYLFMLSLIYLFTLRYTLKVFSCEIFI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSEFFFRPDGAFFSKSFYFFGVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLLASFKLHKLYLNTIIIILGSVLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLFGRGFGSFILDRLRIEIVPLEILQK
HHHHHHHCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHEEEHHHHHHH
TGVIGVFISLVPMLLIFLKGYFLNSTKTSLMMSLILFFSITVSITNPFLFTPMGIFIIGV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VVLWVFSIENIQISNNLTSGAK
HHHHHHHHCCEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152