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The map label for this gene is ompD [H]

Identifier: 30063231

GI number: 30063231

Start: 1828994

End: 1830094

Strand: Direct

Name: ompD [H]

Synonym: S1887

Alternate gene names: 30063231

Gene position: 1828994-1830094 (Clockwise)

Preceding gene: 30063230

Following gene: 30063232

Centisome position: 39.77

GC content: 44.5

Gene sequence:

>1101_bases
ATGAAATTAAAAATAGTTGCGGTGGTTGTAACTGGTTTGTTAGCTGCGAACGTAGCACACGCTGCCGAAGTCTATAACAA
GGATGGTAATAAACTCGACCTTTATGGCAAGGTTACCGCTCTACGTTATTTTACTGATGATAAGCGTGACGATGGTGATA
AAACTTATGCCCGTCTCGGCTTTAAAGGAGAAACGCAAATCAATGATCAAATGATTGGTTTTGGTCACTGGGAATATGAT
TTTAAAGGCTATAACGATGAAGCCAACGGCTCGCGCGGCAACAAGACCCGTCTGGCCTATGCTGGTTTAAAAATTAGTGA
ATTTGGCTCTCTGGACTATGGTCGTAACTACGGTGTCGGCTACGACATTGGTTCATGGACCGATATGTTGCCAGAATTTG
GTGGCGATACCTGGAGTCAGAAAGATGTCTTCATGACATACCGTACCACCGGTCTAGCAACCTATCGCAACTACGATTTC
TTTGGCTTAATTGAAGGGCTGAACTTTGCCGCGCAATATCAAGGCAAAAATAAACGTACTGACAACAGTCATCTTTATGG
TGCTGACGACACGCGTGCCAACGGTGACGGTTTCGGTATCTCCTCAACTTATGTTTATGATGGCTTTGGTATCGGTGCGG
TATATACCAAATCCGATCGGACAAATGCGCAGGAAAGAGCCGCAGCTAATCCTCTCAATGCCTCCGGTAAGAATGCAGAA
CTATGGGCCACAGGTATAAAGTATGATGCCAACAACATCTACTTTGCAGCTAATTACGATGAAACATTAAACATGACCAC
CTATGGGGATGGTTATATCTCTAACAAAGCACAAAGTTTTGAAGTGGTGGCGCAATATCAATTCGACTTCGGCTTGCGCC
CATCACTCGCTTACCTGAAATCGAAAGGCAGAGATCTGGGCCGCTACGCCGACCAGGACATGATTGAGTATATCGACGTT
GGTGCGACGTATTTCTTCAACAAAAATATGTCGACCTATGTTGATTATAAAATCAACCTGATTGATGAAAGCGACTTTAC
CCGTGCCGTAGATATTCGCACCGATAACATCGTCGCTACGGGCATTACCTATCAGTTCTAA

Upstream 100 bases:

>100_bases
ATCACCATTCTATTTTAAAAACAGTATGTCATTTATAAATGACGCCGTTTAAAATTCGTTTAGAAAATACGTTTAACGAT
AATTAAAAGGATTCTGTTAA

Downstream 100 bases:

>100_bases
CGTCCTCTCCTGACCAGCCCTTCTCTGGGCTGGTTTTTGATTTAAGTGCTGCTGTATGACTCCTTAAGTAAAAATGAGCA
ATTCTTGATATTTCTGGTCA

Product: putative outer membrane porin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDF
FGLIEGLNFAAQYQGKNKRTDNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYDETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYADQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF

Sequences:

>Translated_366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDF
FGLIEGLNFAAQYQGKNKRTDNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYDETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYADQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF
>Mature_366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDF
FGLIEGLNFAAQYQGKNKRTDNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYDETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYADQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=373, Percent_Identity=59.7855227882037, Blast_Score=420, Evalue=1e-119,
Organism=Escherichia coli, GI1786436, Length=368, Percent_Identity=55.9782608695652, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1787641, Length=382, Percent_Identity=58.3769633507853, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1787160, Length=377, Percent_Identity=56.4986737400531, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41034; Mature: 41034

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVG
CCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCC
YDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDFFGLIEGLNFAAQYQGKNKRT
CCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCEEEECCCCEEEEECCCCCCC
DNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
CCCEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCE
LWATGIKYDANNIYFAANYDETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLK
EEEEEEEECCCEEEEEECCCCEEEEEECCCCEECCCCCCEEEEEEEEECCCCCCHHHHHH
SKGRDLGRYADQDMIEYIDVGATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVAT
HCCCHHHHHCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEE
GITYQF
CEEECC
>Mature Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVG
CCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCC
YDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDFFGLIEGLNFAAQYQGKNKRT
CCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCEEEECCCCEEEEECCCCCCC
DNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
CCCEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCE
LWATGIKYDANNIYFAANYDETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLK
EEEEEEEECCCEEEEEECCCCEEEEEECCCCEECCCCCCEEEEEEEEECCCCCCHHHHHH
SKGRDLGRYADQDMIEYIDVGATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVAT
HCCCHHHHHCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEE
GITYQF
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA