Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yddG
Identifier: 30063230
GI number: 30063230
Start: 1827858
End: 1828739
Strand: Direct
Name: yddG
Synonym: S1885
Alternate gene names: 30063230
Gene position: 1827858-1828739 (Clockwise)
Preceding gene: 30063226
Following gene: 30063231
Centisome position: 39.74
GC content: 49.77
Gene sequence:
>882_bases ATGACACGACAAAAAGCAACGCTCATAGGGCTAATAGCGATCGTCCTGTGGAGCACGATGGTAGGATTGATTCGCGGTGT CAGCGAGGGGCTCGGCCCGGTCGGCGGCGCAGCTGCTATCTATTCATTAAGCGGGCTGCTGTTAATCTTCACGGTTGGAT TTCCGCGTATTCGGCAGATTCCGAAAGGCTATTTACTCGCCGGGAGTCTGTTATTCGTCAGCTATGAAATCTATCTGGCG CTTTCCTTAGGGTATGCGGCGACCCGTCATCAGGCGATTGAAGTGGGTATGGTGAACTATCTGTGGCCCAGCCTGACAAT TCTCTTTGCCATTCTGTTTAATGGTCAGAAAACCAACTGGCTGATTGTACCAGGATTATTATTAGCCCTGGTCGGCGTCT GCTGGGTGTTAGGCGGTGAGAATGGGTTACATTATGATGAAATCATCAATAATATCACCACCAGCCCATTGAGTTATTTC CTGGCGTTTATTGGTGCGTTTATCTGGGCAGCCTATTGCACAGTAACGAATAAATACGCACGCGGATTTAACGGAATTAC CGTTTTTGTCCTGCTAACGGGAGCATGTCTGTGGATTTACTATTTTCTCACGCCACAACCAGAAATGGTATTTAGCACGC CCGTCATGATTAAACTCATCTCTGCGGCATTTACCTTAGGATTTGCTTATACTGCATGGAATGTCGGTATATTGCATGGC AATGTCACCATAATGGCGGTAGGCTCGTATTTTACGCCTGTACTTTCCTCAGCGCTTGCAGCCGTGCTGCTCAGCGCCCC GCTGTCGTTCTCGTTCTGGCAAGGCGCACTAATGGTCTGCGGCGGTTCCCTGCTCTGCTGGCTGGCGACACGTCGTGGTT AA
Upstream 100 bases:
>100_bases AATAGCGGTAGAAAAACGCACCACTGCCTGACAGGCCAGTTAAAAAAATGCTATAAAATTCAGCTTAATTTTTAACGGCA AGAGAGACAAAACAGCGAGC
Downstream 100 bases:
>100_bases AATAATTGCCGGGTCTACGGCCCGGCAGTTAATCAGATAAATTCCGACAATATTAAAAAATAAATTTCAAATACCAGTAA TTCACCTTATATCTCATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEIYLA LSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIKLISAAFTLGFAYTAWNVGILHG NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
Sequences:
>Translated_293_residues MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEIYLA LSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIKLISAAFTLGFAYTAWNVGILHG NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG >Mature_292_residues TRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEIYLAL SLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYFL AFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIKLISAAFTLGFAYTAWNVGILHGN VTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DUF6 domain [H]
Homologues:
Organism=Escherichia coli, GI145693132, Length=293, Percent_Identity=97.6109215017065, Blast_Score=564, Evalue=1e-162,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31679; Mature: 31548
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHC PKGYLLAGSLLFVSYEIYLALSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNW CCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYA EEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIKLISAAFTLGFAYTAWNVGILHG CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHEEEEEEEC NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG CEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHHHCCC >Mature Secondary Structure TRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQI CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHC PKGYLLAGSLLFVSYEIYLALSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNW CCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYA EEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIKLISAAFTLGFAYTAWNVGILHG CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHEEEEEEEC NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG CEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1834669; 7567469 [H]