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The map label for this gene is yddM

Identifier: 30063226

GI number: 30063226

Start: 1822446

End: 1822808

Strand: Direct

Name: yddM

Synonym: S1881

Alternate gene names: 30063226

Gene position: 1822446-1822808 (Clockwise)

Preceding gene: 30063225

Following gene: 30063230

Centisome position: 39.62

GC content: 49.04

Gene sequence:

>363_bases
ATGGATTATTGTTGCGTAGGAAGGAACAATAATGATAGTGTTCCCAGAGAAGTAACGCTACTGAGAGTAAAGACACTAAT
GAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTTAATGTCAGCCTGCGCGAGTTTG
CCAGAGCAATGGAAATTGCGCCCTCAACGGCAAGCCGATTGCTGACCGGAAAAGCAGCTTTGACGCCAGAAATGGCAATT
AAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCAGAAAA
AACGGTGGTTGTGTCGCGATTACGCCGTCTGGTTACGCAATAA

Upstream 100 bases:

>100_bases
CGTGGCCGTATGGTGATTGATTTCCGTCACTAAGAGGTCTTTGCTGCGACTCCCATGTTCGGGTCGCAGCATCGCACACT
CTCCAACATGAAATGGCTAA

Downstream 100 bases:

>100_bases
AAAATTGCACCCTATAAAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTAC
ACGTTCACTTCAATCTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAI
KLSVVIGSSPQMWLNLQNAWSLAEAEKTVVVSRLRRLVTQ

Sequences:

>Translated_120_residues
MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAI
KLSVVIGSSPQMWLNLQNAWSLAEAEKTVVVSRLRRLVTQ
>Mature_120_residues
MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAI
KLSVVIGSSPQMWLNLQNAWSLAEAEKTVVVSRLRRLVTQ

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693133, Length=94, Percent_Identity=98.936170212766, Blast_Score=186, Evalue=3e-49,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13364; Mature: 13364

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLDELNVSLREFARAMEIA
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHCC
PSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVVVSRLRRLVTQ
CHHHHHHHHCCHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLDELNVSLREFARAMEIA
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHCC
PSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVVVSRLRRLVTQ
CHHHHHHHHCCHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]