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The map label for this gene is ycjZ

Identifier: 30062847

GI number: 30062847

Start: 1389744

End: 1390226

Strand: Direct

Name: ycjZ

Synonym: S1421

Alternate gene names: 30062847

Gene position: 1389744-1390226 (Clockwise)

Preceding gene: 30062846

Following gene: 30062850

Centisome position: 30.22

GC content: 48.86

Gene sequence:

>483_bases
ATGAAGCGTGAAGAAATCGCTGATCTGATGGCGTTTGTCGTCGTTGCAGAGGAGCGTAGCTTCACTCGCGCAGCAGCCCG
CCTGAGCATGGTGCAGTCAGCTTTAAGCCAGATAGTGCGCCGTATAGAAGAACGATTGGGATTGCGGCTTCTGACGCGAA
CCACGCGCAGCGTTGTACCCACTGAAGCGGGCGAGCATCTTTTGTCTGTTCTTGGCCCTATATTGCATGACATAGATTCT
GCCCTGACATCCCTGAGCGATCTGCAGAACCGCCCATCCGGGACAATACGTATTACTACTGTAGAACATGCAGCAAAAAC
GATATTGTTACCAGCCATGCGCACATTCCTGAAATCGCATCCTGAAATTGATATTCAGCTTACCATTGATTATGGTTTGA
CCGATGTCGTTTCTGAACGTTTTGATGCAGGCGTCCTGAGGTGTACTGGCAATAGCGGATACTACCATTTGTTCTTTTTT
TAA

Upstream 100 bases:

>100_bases
TGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCTAAATCATGATTAGACCTATCATTTAAATGATTAAT
AGATTGTATGGAGATACTGA

Downstream 100 bases:

>100_bases
GCAGCCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATATTCCCCAGACGAGAGTGACGACGCTGACGATTGTA
GAAAATCTCAATGTATTCCC

Product: putative LYSR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDS
ALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF

Sequences:

>Translated_160_residues
MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDS
ALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF
>Mature_160_residues
MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDS
ALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=145, Percent_Identity=97.2413793103448, Blast_Score=279, Evalue=8e-77,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=38.0952380952381, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI1786401, Length=138, Percent_Identity=31.1594202898551, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1789639, Length=139, Percent_Identity=31.6546762589928, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=35.7723577235772, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=156, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI145693105, Length=125, Percent_Identity=30.4, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI145693193, Length=144, Percent_Identity=31.9444444444444, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081978, Length=137, Percent_Identity=29.9270072992701, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1786448, Length=138, Percent_Identity=28.2608695652174, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 17885; Mature: 17885

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
PEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF
CCEEEEEEECCCHHHHHHHHHCCCEEEEECCCCEEEEEEC
>Mature Secondary Structure
MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
PEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF
CCEEEEEEECCCHHHHHHHHHCCCEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]